RNA–Protein interactions for RNA: ENST00000394456.9

GTF2F1-201, Transcript of general transcription factor IIF subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2F1, Length 2,731 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2F1-201ENST00000394456 WASH2PQ6VEQ5 465 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 FAM83HQ6ZRV2 1179 aaPredicted RBP12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 NEK10Q6ZWH5 1172 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 VN1R5Q7Z5H4 357 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 BCDIN3DQ7Z5W3 292 aaKnown RBP12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 CACUL1Q86Y37 369 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 OTUB1Q96FW1 271 aaPredicted RBP12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 ASB16Q96NS5 453 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 ITPAQ9BY32 194 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 WDR12Q9GZL7 423 aaKnown RBP12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 REEP4Q9H6H4 257 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 FBXO8Q9NRD0 319 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 C1GALT1Q9NS00 363 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 PLXND1Q9Y4D7 1925 aa12.89□□□□□ -0.35
GTF2F1-201ENST00000394456 DOCK8Q8NF50 2099 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 AGRPO00253 132 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 TBX1O43435 398 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 EIF2B2P49770 351 aaKnown RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 GAB4Q2WGN9 574 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 UBE2UQ5VVX9 321 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 ZNF547Q8IVP9 402 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 SVOPQ8N4V2 548 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 RHOXF1Q8NHV9 184 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 SLC38A4Q969I6 547 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 CHCHD6Q9BRQ6 235 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 IGFLR1Q9H665 355 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 SLAMF7Q9NQ25 335 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 DMRT3Q9NQL9 472 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 SCHIP1Q9P0W5 487 aaPredicted RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 DEC1Q9P2X7 70 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 DPP7Q9UHL4 492 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 YBX2Q9Y2T7 364 aaKnown RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 KCNE2Q9Y6J6 123 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 NUMA1Q14980 2115 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 HEPACAM2A8MVW5 462 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 KPNA5O15131 536 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 SEMA7AO75326 666 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 DNAJB5O75953 348 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 ADORA3P0DMS8 318 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 PRIM2P49643 509 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 EEF1A2Q05639 463 aaKnown RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 ZNF763Q0D2J5 394 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 ST3GAL4Q11206 333 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 GCNT6Q5T4J0 391 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 TNFAIP8L2Q6P589 184 aaPredicted RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 TRMT11Q7Z4G4 463 aaKnown RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 RBM45Q8IUH3 476 aaKnown RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 VPS37AQ8NEZ2 397 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 WFIKKN2Q8TEU8 576 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 PHF10Q8WUB8 498 aaKnown RBP12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 HPS1Q92902 700 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 RAB8BQ92930 207 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 ARRDC3Q96B67 414 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 FAM129BQ96TA1 746 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 ACER3Q9NUN7 267 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 MS4A12Q9NXJ0 267 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 DKK3Q9UBP4 350 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 SLC27A6Q9Y2P4 619 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 TMEM98Q9Y2Y6 226 aa12.88□□□□□ -0.35
GTF2F1-201ENST00000394456 A0A0G2JN53 185 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 RNASET2O00584 256 aaKnown RBP12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 AP2A2O94973 939 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 SOX14O95416 240 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 CDK1P06493 297 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 GABRB1P18505 474 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 CHI3L1P36222 383 aaPredicted RBP12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 ASMTP46597 345 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 C21orf58P58505 322 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 CDK6Q00534 326 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 TAP2Q03519 686 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 ZNF658BQ4V348 819 aaPredicted RBP12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 IFI44LQ53G44 452 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 C9orf64Q5T6V5 341 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 ZNF675Q8TD23 568 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 SMARCD2Q92925 531 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 PPCDCQ96CD2 204 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 CXorf36Q9H7Y0 433 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 BRF2Q9HAW0 419 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 FFAR1O14842 300 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 AQP9O43315 295 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 LILRB5O75023 590 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 NFATC1O95644 943 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 TBX6O95947 436 aaPredicted RBP12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 GASTP01350 101 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 HNRNPFP52597 415 aaKnown RBP12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 LSM11P83369 360 aaKnown RBP eCLIP12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 CNTN1Q12860 1018 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 KCNC3Q14003 757 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 ZNF234Q14588 700 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 PUM1Q14671 1186 aaKnown RBP eCLIP12.87□□□□□ -0.357e-7■■□□□ 13.4
GTF2F1-201ENST00000394456 MICAQ29983 383 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 SPIN4Q56A73 249 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 ANXA8L1Q5VT79 327 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 CAMKMTQ7Z624 323 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 B3GNT7Q8NFL0 401 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 LRIG1Q96JA1 1093 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 IL4I1Q96RQ9 567 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 SLC6A16Q9GZN6 736 aa12.87□□□□□ -0.35
GTF2F1-201ENST00000394456 TM7SF3Q9NS93 570 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms