RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 DCKP27707 260 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CD34P28906 385 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CA5AP35218 305 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ASPAP45381 313 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 PSMD8P48556 350 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SPATA31D4Q6ZUB0 917 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 WDSUB1Q8N9V3 476 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ZNF436Q9C0F3 470 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GBA2Q9HCG7 927 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TMEM181Q9P2C4 612 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 FBXL21Q9UKT6 434 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 DNMT3AQ9Y6K1 912 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 OR6C75A6NL08 312 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 WNT10BO00744 389 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SDHDO14521 159 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 IFNA1P01562 189 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 IFNA10P01566 189 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TAS2R50P59544 299 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CHRFAM7AQ494W8 412 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 DNM1P34Q6PK57 102 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 OR5H6Q8NGV6 325 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 MOCOSQ96EN8 888 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC29A3Q9BZD2 475 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 UNKLQ9H9P5 680 aaKnown RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 KLRG2A4D1S0 409 aaPredicted RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 OR6C6A6NF89 314 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC34A2O95436 690 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 AGR2O95994 175 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 HOXC6P09630 235 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLURP2P0DP57 97 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 PTH2RP49190 550 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC26A5P58743 744 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GRB7Q14451 532 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 NDUFAF5Q5TEU4 345 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GLT8D1Q68CQ7 371 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TMPRSS9Q7Z410 1059 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TMPRSS12Q86WS5 348 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TICAM1Q8IUC6 712 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 NATD1Q8N6N6 113 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 NEDD4LQ96PU5 975 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ABCG4Q9H172 646 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 PDZD7Q9H5P4 517 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ACTR10Q9NZ32 417 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SORBS2O94875 1100 aaKnown RBP11.43□□□□□ -0.58
SYNPO-202ENST00000394243 VNN1O95497 513 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC36A3Q495N2 470 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 REEP3Q6NUK4 255 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CATSPERGQ6ZRH7 1159 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 METTL21AQ8WXB1 218 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SULT4A1Q9BR01 284 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 GTF2IRD1Q9UHL9 959 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CXCL11O14625 94 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC6A6P31641 620 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 EPHX2P34913 555 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 HK3P52790 923 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 TRAM2Q15035 370 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC22A10Q63ZE4 541 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 SLC27A4Q6P1M0 643 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 C3orf49Q96BT1 292 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 ST6GALNAC4Q9H4F1 302 aa11.43□□□□□ -0.58
SYNPO-202ENST00000394243 CIB4A0PJX0 185 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 MEIOCA2RUB1 952 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 AGPAT2O15120 278 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CERS1P27544 350 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 AGTR2P50052 363 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 RAB4BP61018 213 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 C3P1Q6ZMU1 363 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 PRSS48Q7RTY5 328 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 BEST4Q8NFU0 473 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CMTM7Q96FZ5 175 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CEPT1Q9Y6K0 416 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 LRRIQ1Q96JM4 1722 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 MAFKO60675 156 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 POP4O95707 220 aaKnown RBP11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CAPNS1P04632 268 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 ATG9BQ674R7 924 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CHST9Q7L1S5 443 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 WDR53Q7Z5U6 358 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-202ENST00000394243 KBTBD6Q86V97 674 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 TESCQ96BS2 214 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 UQCC2Q9BRT2 126 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 ARMC1Q9NVT9 282 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 LRFN1Q9P244 771 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CYP8B1Q9UNU6 501 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 OR8U9P0C7N5 309 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 CXCL9Q07325 125 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 MFSD13AQ14CX5 517 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 C14orf28Q4W4Y0 310 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 FAM122CQ6P4D5 195 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 HS3ST5Q8IZT8 346 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 POC1BQ8TC44 478 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 MALSU1Q96EH3 234 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 SLC25A44Q96H78 314 aaPredicted RBP11.42□□□□□ -0.58
SYNPO-202ENST00000394243 RPL10LQ96L21 214 aaKnown RBP11.42□□□□□ -0.58
SYNPO-202ENST00000394243 DERL2Q9GZP9 239 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 IQGAP1P46940 1657 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 SPATA31A1Q5TZJ5 1347 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 A0A1B0GVI7 797 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 SC5DO75845 299 aa11.42□□□□□ -0.58
SYNPO-202ENST00000394243 PRKCGP05129 697 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms