RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 LAX1Q8IWV1 398 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 PEX5LQ8IYB4 626 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 THEM5Q8N1Q8 247 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 CHCHD4Q8N4Q1 142 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 CHPT1Q8WUD6 406 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 TDRD1Q9BXT4 1180 aaKnown RBP1.78□□□□□ -2.13
VPS13A-206ENST00000376646 PITPNM3Q9BZ71 974 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 MTIF3Q9H2K0 278 aaKnown RBP1.78□□□□□ -2.13
VPS13A-206ENST00000376646 GNB4Q9HAV0 340 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 POLKQ9UBT6 870 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 FETUBQ9UGM5 382 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 SATB2Q9UPW6 733 aa1.78□□□□□ -2.13
VPS13A-206ENST00000376646 IGLV3-10A0A075B6K4 115 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CCDC162PA2VCL2 907 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 FAM149AA5PLN7 773 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 MAGEB2O15479 319 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 GRAP2O75791 330 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 KRT33AO76009 404 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CALCAP01258 141 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 GJB2P29033 226 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 TRA2AQ13595 282 aaKnown RBP eCLIP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PPA1Q15181 289 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 LRRC37A5PQ49AS3 106 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 TRMT11Q7Z4G4 463 aaKnown RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 POM121L12Q8N7R1 296 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NUP37Q8NFH4 326 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NEK11Q8NG66 645 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PSMA8Q8TAA3 256 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 GATAD1Q8WUU5 269 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SEPT8Q92599 483 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CNRIP1Q96F85 164 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 ATXN7L3BQ96GX2 97 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 C2orf48Q96LS8 159 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 FAM218AQ96MZ4 157 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 ATP6V0BQ99437 205 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 DDX50Q9BQ39 737 aaKnown RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PNPLA3Q9NST1 481 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 EXOC1Q9NV70 894 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CYP39A1Q9NYL5 469 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 ELF5Q9UKW6 265 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NPHP3Q7Z494 1330 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 A0A087WZ39 114 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SYCE3A1L190 88 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 KRTAP4-16G5E9R7 235 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 VTNP04004 478 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CHRNGP07510 517 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NUDT17P0C025 328 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 B4GALT1P15291 398 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 EZRP15311 586 aaKnown RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 STMN1P16949 149 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 AADACP22760 399 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PGFP49763 221 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NT5C2P49902 561 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CLCN4P51793 760 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 KRTAP10-8P60410 259 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 ARF5P84085 180 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 GFPT1Q06210 699 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SLC3A1Q07837 685 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 LCP2Q13094 533 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PDE7AQ13946 482 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 CEACAM7Q14002 265 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 EFTUD2Q15029 972 aaKnown RBP eCLIP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 RNF212Q495C1 297 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SLC27A4Q6P1M0 643 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 C15orf52Q6ZUT6 534 aaKnown RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 TOM1L2Q6ZVM7 507 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SLC47A2Q86VL8 602 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 C17orf47Q8NEP4 570 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 ZPLD1Q8TCW7 415 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 MAPK15Q8TD08 544 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 GGHQ92820 318 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 BPIFA2Q96DR5 249 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SPATA13Q96N96 652 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 AGAP4Q96P64 663 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PRAM1Q96QH2 718 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 GAL3ST4Q96RP7 486 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PUS3Q9BZE2 481 aaKnown RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 TRIM7Q9C029 511 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NAPBQ9H115 298 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 MAGEF1Q9HAY2 307 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 C3orf14Q9HBI5 128 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 FAM212BQ9NTI7 297 aaPredicted RBP1.77□□□□□ -2.13
VPS13A-206ENST00000376646 COMMD8Q9NX08 183 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 MAD2L2Q9UI95 211 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PSORS1C1Q9UIG5 152 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 MOSPD1Q9UJG1 213 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 PLCL2Q9UPR0 1127 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 KCNK6Q9Y257 313 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 EXOC6BQ9Y2D4 811 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 SELENOKQ9Y6D0 94 aa1.77□□□□□ -2.13
VPS13A-206ENST00000376646 NEDD4P46934 1319 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 RPGRIP1LQ68CZ1 1315 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 GPRASP1Q5JY77 1395 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 TMEM129A0AVI4 362 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 ACOD1A6NK06 481 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 A8MU10 97 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 SLC1A7O00341 560 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 LRCH4O75427 683 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 GMNNO75496 209 aa1.76□□□□□ -2.13
VPS13A-206ENST00000376646 CLN5O75503 358 aa1.76□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms