RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 HAT1O14929 419 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 GRM6O15303 877 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 GPX5O75715 221 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 IFNW1P05000 195 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 ELFN1P0C7U0 828 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PPIBP23284 216 aaKnown RBP11.6□□□□□ -0.55
CLIP3-201ENST00000360535 METAP1P53582 386 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 OR2B6P58173 313 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 SP140Q13342 867 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 MPEG1Q2M385 716 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 SPIN4Q56A73 249 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 CDKL4Q5MAI5 379 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 NXNL2Q5VZ03 156 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 LHX8Q68G74 356 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 NRARPQ7Z6K4 114 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 TCEANCQ8N8B7 351 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 GPR151Q8TDV0 419 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 C16orf78Q8WTQ4 265 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 POP5Q969H6 163 aaKnown RBP11.6□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF558Q96NG5 402 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 SIGLEC11Q96RL6 698 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 LYSMD1Q96S90 227 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PIP5K1AQ99755 562 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 SP140LQ9H930 580 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 SRRDQ9UH36 339 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PEX16Q9Y5Y5 336 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 HELZP42694 1942 aaKnown RBP11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PLXNB3Q9ULL4 1909 aa11.6□□□□□ -0.55
CLIP3-201ENST00000360535 PTNP21246 168 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TNFSF8P32971 234 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 SLC15A1P46059 708 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 MVDP53602 400 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 LIPKQ5VXJ0 399 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 ECHDC3Q96DC8 303 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TCEAL4Q96EI5 215 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 HHIPQ96QV1 700 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 SLC6A16Q9GZN6 736 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CHST8Q9H2A9 424 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TOR4AQ9NXH8 423 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TVP23BQ9NYZ1 205 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TMCC3Q9ULS5 477 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 KNL1Q8NG31 2342 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 H0YIV9 168 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TAF4O00268 1085 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CSF2P04141 144 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 ALPPL2P10696 532 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 SSTR4P31391 388 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 UGT2B10P36537 528 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 RPS19P39019 145 aaKnown RBP11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CRISP1P54107 249 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 PRKAG1P54619 331 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 ZNF45Q02386 682 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CNTN1Q12860 1018 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 OR52N2Q8NGI0 321 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 VOPP1Q96AW1 172 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 EXOSC8Q96B26 276 aaKnown RBP11.59□□□□□ -0.55
CLIP3-201ENST00000360535 MCCC1Q96RQ3 725 aaPredicted RBP11.59□□□□□ -0.55
CLIP3-201ENST00000360535 SLC30A2Q9BRI3 323 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 PRRG3Q9BZD7 231 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 GPBP1L1Q9HC44 474 aaPredicted RBP11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TAS2R9Q9NYW1 312 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 ISPDA4D126 451 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 K7ESM1 405 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CCRL2O00421 344 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 NDUFB5O43674 189 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TNFRSF21O75509 655 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 SLCO2B1O94956 709 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 TYRP14679 529 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 ITGA2P17301 1181 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 FRMPD2BQ6IN97 320 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 SLCO4C1Q6ZQN7 724 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CCDC80Q76M96 950 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 PGBD3Q8N328 593 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 CAMKK1Q8N5S9 505 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 GEMIN6Q8WXD5 167 aaKnown RBP11.59□□□□□ -0.55
CLIP3-201ENST00000360535 YIPF4Q9BSR8 244 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 POLR2J2Q9GZM3 115 aaKnown RBP11.59□□□□□ -0.55
CLIP3-201ENST00000360535 MMP28Q9H239 520 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 ABCB9Q9NP78 766 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 PCDHGA3Q9Y5H0 932 aa11.59□□□□□ -0.55
CLIP3-201ENST00000360535 PIPSLA2A3N6 862 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 WASHC1A8K0Z3 465 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 IQCJ-SCHIP1C9J366 451 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TLR4O00206 839 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 RNASET2O00584 256 aaKnown RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 SLC16A5O15375 505 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 TGM5O43548 720 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 DYRK3O43781 588 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 IDH3BO43837 385 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 SNX4O95219 450 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 CYP2A6P11509 494 aaPredicted RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 VIPR1P32241 457 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 MANFP55145 182 aaKnown RBP11.58□□□□□ -0.56
CLIP3-201ENST00000360535 SSX1Q16384 188 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 LY6G5CQ5SRR4 150 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 HIST2H2AA3Q6FI13 130 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 WASH2PQ6VEQ5 465 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 HTR3DQ70Z44 454 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 LAX1Q8IWV1 398 aa11.58□□□□□ -0.56
CLIP3-201ENST00000360535 KIAA1958Q8N8K9 716 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms