RNA–Protein interactions for RNA: ENST00000360264.7

CUX1-203, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CUX1, Length 13,762 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-203ENST00000360264 SLC22A14Q9Y267 594 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 FAM149AA5PLN7 773 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ASGR2P07307 311 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 THEGLP0DJG4 465 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 RPL17P18621 184 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 CCNHP51946 323 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 STC1P52823 247 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 SERTAD2Q14140 314 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PTPRRQ15256 657 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 MANEALQ5VSG8 457 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 TPRG1Q6ZUI0 275 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PYROXD2Q8N2H3 581 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 THEM6Q8WUY1 208 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 KLK6Q92876 244 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 FOXJ1Q92949 421 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 C12orf43Q96C57 262 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 FAM86C1Q9NVL1 165 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 NOCTQ9UK39 431 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 MANBAO00462 879 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ABHD12BQ7Z5M8 362 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 NANOS1Q8WY41 292 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 C1orf21Q9H246 121 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PLIN4Q96Q06 1357 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 FAM170BA6NMN3 283 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 BEND4Q6ZU67 534 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 CDKN2AIPNLQ96HQ2 116 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PWWP2AQ96N64 755 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 HOXD1Q9GZZ0 328 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ZNF226Q9NYT6 803 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 HAS3O00219 553 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 HCRTR2O43614 444 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PRAMEF11O60813 436 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PHC1P78364 1004 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ZNF611Q8N823 705 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 NFKBIDQ8NI38 313 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 REEP4Q9H6H4 257 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 PHLPP1O60346 1717 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 RNF13O43567 381 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 TLX2O43763 284 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 ACTL6BO94805 426 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 MMP2P08253 660 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 MS4A13Q5J8X5 152 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ZFR2Q9UPR6 939 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 KLRG2A4D1S0 409 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 AGAP5A6NIR3 686 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 NCK1P16333 377 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 GNRHRP30968 328 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 FADDQ13158 208 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ELAVL3Q14576 367 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 LASP1Q14847 261 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 PAQR3Q6TCH7 311 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 DPY19L3Q6ZPD9 716 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 HAVCR2Q8TDQ0 301 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 VRK1Q99986 396 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 NAV1Q8NEY1 1877 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 BLACEA4D250 179 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 RPP14O95059 124 aaKnown RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 RNF111Q6ZNA4 994 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 UBE2Q1Q7Z7E8 422 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 ZBTB46Q86UZ6 589 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 IL4I1Q96RQ9 567 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 DOHHQ9BU89 302 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 RGCCQ9H4X1 137 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 GXYLT2A0PJZ3 443 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 EFCAB7A8K855 629 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 INPPL1O15357 1258 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 CST3P01034 146 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 PRKCAP17252 672 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 RAET1LQ5VY80 246 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 KIAA0907Q7Z7F0 614 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 CMASQ8NFW8 434 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 NSMAFQ92636 917 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 HOXB13Q92826 284 aaPredicted RBP9.34□□□□□ -0.91
CUX1-203ENST00000360264 PYCR2Q96C36 320 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 GPR160Q9UJ42 338 aa9.34□□□□□ -0.91
CUX1-203ENST00000360264 C2orf71A6NGG8 1288 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 FAAHO00519 579 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 UGT1A9O60656 530 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 POP7O75817 140 aaKnown RBP9.33□□□□□ -0.92
CUX1-203ENST00000360264 JUNP05412 331 aaKnown RBP9.33□□□□□ -0.92
CUX1-203ENST00000360264 CD3GP09693 182 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 UGT1A6P19224 532 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 HNRNPKP61978 463 aaKnown RBP eCLIP9.33□□□□□ -0.921e-6■■■■□ 24.1
CUX1-203ENST00000360264 DSC3Q14574 896 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 PAFAH1B3Q15102 231 aaKnown RBP9.33□□□□□ -0.92
CUX1-203ENST00000360264 GDF6Q6KF10 455 aaPredicted RBP9.33□□□□□ -0.92
CUX1-203ENST00000360264 NOXRED1Q6NXP6 359 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 EPGNQ6UW88 154 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 SCAMP5Q8TAC9 235 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 C8orf33Q9H7E9 229 aaPredicted RBP9.33□□□□□ -0.92
CUX1-203ENST00000360264 UGT1A7Q9HAW7 530 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 UGT1A10Q9HAW8 530 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 UGT1A8Q9HAW9 530 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 ZSCAN5BA6NJL1 495 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 LOC730098B7Z3J9 87 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 DLDP09622 509 aaKnown RBP9.33□□□□□ -0.92
CUX1-203ENST00000360264 MAGEA11P43364 429 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 BLMHQ13867 455 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 RAB11BQ15907 218 aa9.33□□□□□ -0.92
CUX1-203ENST00000360264 OR4K14Q8NGD5 310 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms