RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 EGFP01133 1207 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 VIPP01282 170 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 SEPHS1P49903 392 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 NUDT6P53370 316 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 SPCS2Q15005 226 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 THAP5Q7Z6K1 395 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 CYP4Z1Q86W10 505 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 ZCCHC7Q8N3Z6 543 aaKnown RBP13.27□□□□□ -0.28
TRIM4-201ENST00000349062 DNAJC5GQ8N7S2 189 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 OR8K5Q8NH50 307 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 ZCCHC10Q8TBK6 192 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 ZNF514Q96K75 400 aaPredicted RBP13.27□□□□□ -0.28
TRIM4-201ENST00000349062 AIF1LQ9BQI0 150 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 ROGDIQ9GZN7 287 aa13.27□□□□□ -0.28
TRIM4-201ENST00000349062 FAM120CQ9NX05 1096 aaKnown RBP13.27□□□□□ -0.28
TRIM4-201ENST00000349062 BCHEP06276 602 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 ACADLP28330 430 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 TTKP33981 857 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 IDUAP35475 653 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 TMEM196Q5HYL7 178 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 DHRS4L2Q6PKH6 230 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 TMEFF1Q8IYR6 380 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 C11orf65Q8NCR3 313 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 ABHD11Q8NFV4 315 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 PATE1Q8WXA2 126 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 SIPA1Q96FS4 1042 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 KLHL31Q9H511 634 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 MARCH7Q9H992 704 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 KRT84Q9NSB2 600 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 SPHK1Q9NYA1 384 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 PSME2Q9UL46 239 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 ERGIC3Q9Y282 383 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 PLXND1Q9Y4D7 1925 aa13.27□□□□□ -0.29
TRIM4-201ENST00000349062 ZNF860A6NHJ4 632 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 CCDC85CA6NKD9 419 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 PLPP1O14494 284 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 PRAMEF10O60809 474 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 COL9A1P20849 921 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 DCKP27707 260 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ACSL1P33121 698 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 FEN1P39748 380 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 RFX3P48380 749 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 TRPC1P48995 793 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 SCARB2Q14108 478 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 CTU2Q2VPK5 515 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 LRIF1Q5T3J3 769 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 NIPAL1Q6NVV3 410 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 Q8N9G6 341 aaPredicted RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 LINC01555Q8NAE3 123 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 OR5D16Q8NGK9 328 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 RBM4BQ9BQ04 359 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 RBM4Q9BWF3 364 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 FGF22Q9HCT0 170 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ADPRHL2Q9NX46 363 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 THUMPD1Q9NXG2 353 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 GMPPBQ9Y5P6 360 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 A0A1W2PS29 197 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ERI3O43414 337 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 VEGFDO43915 354 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ACTR1BP42025 376 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 PXNP49023 591 aaPredicted RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ACTR1AP61163 376 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 MPEG1Q2M385 716 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 CEACAM20Q6UY09 585 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ADCK1Q86TW2 530 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 PACRGLQ8N7B6 248 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 PDXPQ96GD0 296 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 KCNK12Q9HB15 430 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ABCB10Q9NRK6 738 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 TUBA8Q9NY65 449 aaPredicted RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 C3orf18Q9UK00 162 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 C2orf16Q68DN1 1984 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 A6NL46 340 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 NDUFS4O43181 175 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 NADKO95544 446 aaPredicted RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 MAP2K4P45985 399 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 ID2Q02363 134 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 LRRC32Q14392 662 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 TMEM236Q5W0B7 351 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 DCP2Q8IU60 420 aaKnown RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 TAGAPQ8N103 731 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 OR5K1Q8NHB7 308 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 PSMA8Q8TAA3 256 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 CAPSLQ8WWF8 208 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 CSF3RQ99062 836 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 DPH7Q9BTV6 452 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 POU2F3Q9UKI9 436 aa13.26□□□□□ -0.29
TRIM4-201ENST00000349062 KIF26AQ9ULI4 1882 aaPredicted RBP13.26□□□□□ -0.29
TRIM4-201ENST00000349062 EML2O95834 649 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 BCL7AQ4VC05 210 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 ANXA8L1Q5VT79 327 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 ZNF776Q68DI1 518 aaPredicted RBP13.25□□□□□ -0.29
TRIM4-201ENST00000349062 METTL2BQ6P1Q9 378 aaKnown RBP13.25□□□□□ -0.29
TRIM4-201ENST00000349062 ZNF420Q8TAQ5 688 aaPredicted RBP13.25□□□□□ -0.29
TRIM4-201ENST00000349062 ARSGQ96EG1 525 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 MBOAT4Q96T53 435 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 FUNDC2Q9BWH2 189 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 OSBPL10Q9BXB5 764 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 NDEL1Q9GZM8 345 aa13.25□□□□□ -0.29
TRIM4-201ENST00000349062 WDR70Q9NW82 654 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms