RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 CACHD1Q5VU97 1274 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 BSPRYQ5W0U4 402 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 DPY19L2P1Q6NXN4 242 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF549Q6P9A3 640 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 LRRC31Q6UY01 552 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CERS6Q6ZMG9 384 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CDHR3Q6ZTQ4 885 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 BBS12Q6ZW61 710 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CBLL1Q75N03 491 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 RUFY3Q7L099 469 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 DAAM2Q86T65 1068 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MTDHQ86UE4 582 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CEP57Q86XR8 500 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 BBS5Q8N3I7 341 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CCDC185Q8N715 623 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MFSD9Q8NBP5 474 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 PDPRQ8NCN5 879 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 OR4F17Q8NGA8 305 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 NOC3LQ8WTT2 800 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 LRTOMTQ8WZ04 291 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 GTF3C6Q969F1 213 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF653Q96CK0 615 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 HMCESQ96FZ2 354 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 PDLIM5Q96HC4 596 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 OR4F4Q96R69 305 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 GPR21Q99679 349 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 C11orf70Q9BRQ4 267 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 FAM167BQ9BTA0 163 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 PHACTR1Q9C0D0 580 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TNKS2Q9H2K2 1166 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 RHBGQ9H310 441 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ZBTB20Q9HC78 741 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 AGPAT3Q9NRZ7 376 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 KLC4Q9NSK0 619 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 C20orf141Q9NUB4 165 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ASB6Q9NWX5 421 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 GGT7Q9UJ14 662 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 SLC39A10Q9ULF5 831 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ST14Q9Y5Y6 855 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 USP34Q70CQ2 3546 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TET2Q6N021 2002 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MACF1Q9UPN3 7388 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 A0A0A6YYC8 382 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 LOC100289279A0A1B0GTE1 492 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 GMNCA6NCL1 334 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MFSD2BA6NFX1 497 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 I3L1I5 382 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 SOCS2O14508 198 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TM9SF1O15321 606 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CALUO43852 315 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 RECQL5O94762 991 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 PSMG1O95456 288 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TFF1P04155 84 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TMEM191BP0C7N4 346 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 LCP1P13796 627 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TFE3P19532 575 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CASP14P31944 242 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CCKARP32238 428 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MYCNOSP40205 109 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ACTR1BP42025 376 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 OR3A2P47893 321 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 SLC6A3Q01959 620 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 AUHQ13825 339 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 HERC3Q15034 1050 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ELAVL1Q15717 326 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TBCCQ15814 346 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 FASTKD1Q53R41 847 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ZNF468Q5VIY5 522 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 FRG2Q64ET8 278 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 NAIF1Q69YI7 327 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 SMARCD3Q6STE5 483 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 KRTAP5-5Q701N2 237 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ARMCX6Q7L4S7 300 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 P4HA3Q7Z4N8 544 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 POLNQ7Z5Q5 900 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 BTLAQ7Z6A9 289 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MMAAQ8IVH4 418 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CCDC65Q8IXS2 484 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 LILRA2Q8N149 483 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ATL1Q8WXF7 558 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 RAD51AP1Q96B01 352 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TRIM11Q96F44 468 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 THOC1Q96FV9 657 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 MUS81Q96NY9 551 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 NT5C1BQ96P26 610 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ZIM3Q96PE6 472 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ATOH8Q96SQ7 321 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ADAT1Q9BUB4 502 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 TMPRSS13Q9BYE2 586 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ALG2Q9H553 416 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 WDR55Q9H6Y2 383 aaPredicted RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 POPDC3Q9HBV1 291 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 ABCB9Q9NP78 766 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 NLRC4Q9NPP4 1024 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CD93Q9NPY3 652 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 POLE3Q9NRF9 147 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 EURLQ9NYK6 297 aa1.38□□□□□ -2.19
LINC00643-201ENST00000334389 CNOT8Q9UFF9 292 aaKnown RBP1.38□□□□□ -2.19
LINC00643-201ENST00000334389 AGAP1Q9UPQ3 857 aa1.38□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms