RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 ARHGAP33O14559 1287 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 DPM1O60762 260 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 GADD45GO95257 159 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CATP04040 527 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 FURINP09958 794 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CHMP24386 653 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 SOX3P41225 446 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 LIMK1P53667 647 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CSNK2BP67870 215 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 MADCAM1Q13477 382 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 SSX1Q16384 188 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 SPIN4Q56A73 249 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 HENMT1Q5T8I9 393 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 DEPDC1Q5TB30 811 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 MED27Q6P2C8 311 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 PNCKQ6P2M8 343 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CAMKMTQ7Z624 323 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 OR52N2Q8NGI0 321 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 OR56A3Q8NH54 315 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 WDR36Q8NI36 951 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.77□□□□□ -0.538e-9■■■■■ 57.4
VPS33B-201ENST00000333371 WFDC6Q9BQY6 131 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 WRAP53Q9BUR4 548 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 NXF2Q9GZY0 626 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 ABCG4Q9H172 646 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 NMNAT1Q9HAN9 279 aaPredicted RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 EXOSC4Q9NPD3 245 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 IL23AQ9NPF7 189 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 C5AR2Q9P296 337 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 NOTCH4Q99466 2003 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 DOCK9Q9BZ29 2069 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 A0A0C4DFX4 3053 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 TRBV4-1A0A0J9YWV2 114 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 AP3D1O14617 1153 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 FFAR1O14842 300 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 KPNA5O15131 536 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 GPX5O75715 221 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CHRM5P08912 532 aaPredicted RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 NPPBP16860 134 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 PPIBP23284 216 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 VIPR1P32241 457 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 OPRD1P41143 372 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 XCR1P46094 333 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 LIM2P55344 173 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 EEF1A2Q05639 463 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 TMEM115Q12893 351 aaPredicted RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 IRF3Q14653 427 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 MLIPQ5VWP3 458 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 PTCHD4Q6ZW05 846 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CELF5Q8N6W0 485 aaKnown RBP11.77□□□□□ -0.53
VPS33B-201ENST00000333371 SCAIQ8N9R8 606 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 C16orf78Q8WTQ4 265 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 PPCDCQ96CD2 204 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 VPS35Q96QK1 796 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 ACAT2Q9BWD1 397 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 ZNF556Q9HAH1 456 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 EHD3Q9NZN3 535 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 DNAJC27Q9NZQ0 273 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 PLAGL1Q9UM63 463 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 ZNF232Q9UNY5 417 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 CORO2BQ9UQ03 480 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 KCNE2Q9Y6J6 123 aa11.77□□□□□ -0.53
VPS33B-201ENST00000333371 KIAA1549LQ6ZVL6 1849 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 HEATR5BQ9P2D3 2071 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 SLC5A10A0PJK1 596 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 K7ESM1 405 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 HAT1O14929 419 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 GRM6O15303 877 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 TIMP2P16035 220 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 LRRC74AQ0VAA2 488 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 PUM1Q14671 1186 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS33B-201ENST00000333371 ZMAT1Q5H9K5 638 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 TNFAIP8L2Q6P589 184 aaPredicted RBP11.76□□□□□ -0.53
VPS33B-201ENST00000333371 NEK10Q6ZWH5 1172 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 HMGN2P46Q86SG4 172 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 ATCAYQ86WG3 371 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 RBM45Q8IUH3 476 aaKnown RBP11.76□□□□□ -0.53
VPS33B-201ENST00000333371 CFAP206Q8IYR0 622 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 KBTBD8Q8NFY9 601 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 BTN2A2Q8WVV5 523 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 CAPSLQ8WWF8 208 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 TCEAL4Q96EI5 215 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 IL17FQ96PD4 163 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 RAD9AQ99638 391 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 PIP5K1AQ99755 562 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 CNPPD1Q9BV87 410 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 SPATA9Q9BWV2 254 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 EHD1Q9H4M9 534 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 FBXL12Q9NXK8 326 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 INSL6Q9Y581 213 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 TCF20Q9UGU0 1960 aaKnown RBP11.76□□□□□ -0.53
VPS33B-201ENST00000333371 ISPDA4D126 451 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 RTCAO00442 366 aaKnown RBP11.76□□□□□ -0.53
VPS33B-201ENST00000333371 SEMA7AO75326 666 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 ENTPD6O75354 484 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 IL3P08700 152 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 CBLP22681 906 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 TCEA1P23193 301 aaKnown RBP11.76□□□□□ -0.53
VPS33B-201ENST00000333371 BMPR1AP36894 532 aa11.76□□□□□ -0.53
VPS33B-201ENST00000333371 CASP3P42574 277 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms