RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 HHATQ5VTY9 493 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 CLEC6AQ6EIG7 209 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 SCIMPQ6UWF3 145 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 LANCL3Q6ZV70 420 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 MED25Q71SY5 747 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 NUDT13Q86X67 352 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 APLFQ8IW19 511 aaPredicted RBP14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 EFCAB3Q8N7B9 438 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 GOLGA6L1Q8N7Z2 621 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 TMEM102Q8N9M5 508 aaPredicted RBP14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 MGARPQ8TDB4 240 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 TSLPQ969D9 159 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 FER1L6-AS2Q96M78 137 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 UBL7Q96S82 380 aaPredicted RBP14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 MAPKAP1Q9BPZ7 522 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 ZNF717Q9BY31 904 aaPredicted RBP14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 TRIM55Q9BYV6 548 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 LYRM4Q9HD34 91 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 AHSPQ9NZD4 102 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 MRPS33Q9Y291 106 aaKnown RBP14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 FIS1Q9Y3D6 152 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 SPACA6W5XKT8 324 aa14.96□□□□□ -0.01
CCDC28A-201ENST00000332797 UQCRHLA0A096LP55 91 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PCDH17O14917 1159 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PRMT3O60678 531 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 GBAP04062 536 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 UQCRHP07919 91 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 UROSP10746 265 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 COX6A1P12074 109 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 HSD3B1P14060 373 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 HSD3B2P26439 372 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 SERPINB3P29508 390 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CCL11P51671 97 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 HNRNPFP52597 415 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 BTG2P78543 158 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 NSDHLQ15738 373 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ARL13AQ5H913 290 aaPredicted RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CYP20A1Q6UW02 462 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 TMEM205Q6UW68 189 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 QSOX2Q6ZRP7 698 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ZCCHC7Q8N3Z6 543 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CLEC1AQ8NC01 280 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 TMEM52Q8NDY8 209 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PTCHD1Q96NR3 888 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ACPTQ9BZG2 426 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 EML4Q9HC35 981 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 NMRK1Q9NWW6 199 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 KCMF1Q9P0J7 381 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 VPS29Q9UBQ0 182 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 C19orf25Q9UFG5 118 aaPredicted RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 IGSF10Q6WRI0 2623 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 A0A0A6YYD5 115 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CYR61O00622 381 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 AZIN1O14977 448 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 NEFHP12036 1026 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CHN1P15882 459 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 MAOAP21397 527 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CPN2P22792 545 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 SERPINB5P36952 375 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ZNF33BQ06732 778 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 CHI3L2Q15782 390 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 TTMPQ5BVD1 217 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PCSK4Q6UW60 755 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PAGE2Q7Z2X7 111 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ANKRD37Q7Z713 158 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 METTL4Q8N3J2 472 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 GBP7Q8N8V2 638 aaPredicted RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PLPP5Q8NEB5 264 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 AGR3Q8TD06 166 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ATP6V1G3Q96LB4 118 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 DDX31Q9H8H2 851 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 ZNF160Q9HCG1 818 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PRDM9Q9NQV7 894 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PRTFDC1Q9NRG1 225 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 LYARQ9NX58 379 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 NKIRAS1Q9NYS0 192 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 PHF11Q9UIL8 331 aa14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 RALYQ9UKM9 306 aaKnown RBP14.95□□□□□ -0.02
CCDC28A-201ENST00000332797 LOC102723996A0A087X1L8 192 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 IGHV1-45A0A0A0MS14 117 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 NSG1A0A0A6YYJ2 146 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 IGHV3-20A0A0C4DH32 117 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 ARHGAP10A1A4S6 786 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 A6NL46 340 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 CLDN4O14493 209 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 TMPRSS11DO60235 418 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 SASH3O75995 380 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 HPP00738 406 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 SERPINE1P05121 402 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 KLK1P06870 262 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 FAM58BPP0C7Q3 252 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 BGNP21810 368 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 ARRB2P32121 409 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 HNRNPH2P55795 449 aaKnown RBP14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 HMGCS1Q01581 520 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 TBL3Q12788 808 aaKnown RBP14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 SLC13A2Q13183 592 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 KCNAB2Q13303 367 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 LY6DQ14210 128 aa14.94□□□□□ -0.02
CCDC28A-201ENST00000332797 IMPG1Q17R60 797 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 129.8 ms