RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 OR52N2Q8NGI0 321 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 RASSF5Q8WWW0 418 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 CLP1Q92989 425 aaKnown RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 SAMD11Q96NU1 681 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 BRD9Q9H8M2 597 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 MOSPD1Q9UJG1 213 aa12.86□□□□□ -0.35
SKA3-202ENST00000314759 LSM2Q9Y333 95 aaKnown RBP12.86□□□□□ -0.35
SKA3-202ENST00000314759 FAM227AF5H4B4 570 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ENTPD6O75354 484 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 GBAP04062 536 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 HSD3B1P14060 373 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ZNF8P17098 575 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 HSD3B2P26439 372 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 STK19P49842 368 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 HOXC5Q00444 222 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CDK6Q00534 326 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 DUSP7Q16829 419 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CCSMST1Q4G0I0 132 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ERAP2Q6P179 960 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TMPRSS11AQ6ZMR5 421 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 USP45Q70EL2 814 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TMEM150AQ86TG1 271 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 RASGRP3Q8IV61 690 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 GOT1L1Q8NHS2 421 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 GEMIN6Q8WXD5 167 aaKnown RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 VPS35Q96QK1 796 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 NMNAT1Q9HAN9 279 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 SLC25A19Q9HC21 320 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 SNTG1Q9NSN8 517 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TOR4AQ9NXH8 423 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 MAP4K5Q9Y4K4 846 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TMEM202A6NGA9 273 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 MEN1O00255 615 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 MPZL2O60487 215 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 RECKO95980 971 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TIA1P31483 386 aaKnown RBP eCLIP12.85□□□□□ -0.35
SKA3-202ENST00000314759 IFNA8P32881 189 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CTSOP43234 321 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 CRYBB2P43320 205 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 FLT3LGP49771 235 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 KCNC3Q14003 757 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ELOAQ14241 798 aaKnown RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 LEXMQ3ZCV2 418 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 AGTRAPQ6RW13 159 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 PAMR1Q6UXH9 720 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 PRR23CQ6ZRP0 262 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 C11orf74Q86VG3 221 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 HS6ST3Q8IZP7 471 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 OR5AK3PQ8NH89 298 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 UBASH3BQ8TF42 649 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CIDECQ96AQ7 238 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 ARPC5LQ9BPX5 153 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 BHLHE41Q9C0J9 482 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 SGTAO43765 313 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CD70P32970 193 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 SPINT3P49223 89 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 RORCP51449 518 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 RPS13P62277 151 aaKnown RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 MC1RQ01726 317 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 RHAGQ02094 409 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 RBBP4Q09028 425 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 C19orf57Q0VDD7 668 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 LMAN2Q12907 356 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 SLC5A12Q1EHB4 618 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 SPIN4Q56A73 249 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CRB2Q5IJ48 1285 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ZNF770Q6IQ21 691 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 OTOP2Q7RTS6 562 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 KRT73Q86Y46 540 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 LAS2Q8IYD9 372 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 CACTIN-AS1Q8N1I8 211 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ARL14EPQ8N8R7 260 aaPredicted RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 PCSK9Q8NBP7 692 aaKnown RBP12.85□□□□□ -0.35
SKA3-202ENST00000314759 OR5H6Q8NGV6 325 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 GRPEL2Q8TAA5 225 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 SNAPC3Q92966 411 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ECHDC3Q96DC8 303 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 SRRQ9GZT4 340 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TMEM38AQ9H6F2 299 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 TMEM39AQ9NV64 488 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ENPP4Q9Y6X5 453 aa12.85□□□□□ -0.35
SKA3-202ENST00000314759 ANAPC1Q9H1A4 1944 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 OR6C70A6NIJ9 312 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 FAM25AB3EWG3 89 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 FAM25CB3EWG5 89 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 FAM25GB3EWG6 89 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 WWP2O00308 870 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 LATS1O95835 1130 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 PIPP12273 146 aaPredicted RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 CST5P28325 142 aaPredicted RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 FEN1P39748 380 aaKnown RBP12.84□□□□□ -0.35
SKA3-202ENST00000314759 PSPHP78330 225 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 FCHO2Q0JRZ9 810 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 CRHR2Q13324 411 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 MPEG1Q2M385 716 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 CST9Q5W186 159 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 SYCE2Q6PIF2 218 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 Q6ZNB5 142 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 IFNL1Q8IU54 200 aa12.84□□□□□ -0.35
SKA3-202ENST00000314759 FAM46DQ8NEK8 389 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 119.1 ms