RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 CCDC106Q9BWC9 280 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 OPA3Q9H6K4 179 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 SEMA4BQ9NPR2 832 aaPredicted RBP3.88□□□□□ -1.79
USH2A-201ENST00000307340 DTLQ9NZJ0 730 aa3.88□□□□□ -1.79
USH2A-201ENST00000307340 A6NIZ1 184 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 NUDT21O43809 227 aaKnown RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 SULT1C4O75897 302 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SMIM10L2AP0DMW4 78 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SMIM10L2BP0DMW5 78 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ZNF823P16415 610 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RAP1BP61224 184 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RAP2BP61225 183 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RAP1AP62834 184 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 OCLNQ16625 522 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 OR2AP1Q8NGE2 309 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 CORO2AQ92828 525 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 POM121Q96HA1 1249 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ASPNQ9BXN1 380 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 NUDT15Q9NV35 164 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 B8ZZF3 427 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ATP1B2P14415 290 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 RGS7P49802 495 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 GIMAP5Q96F15 307 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RNF32Q9H0A6 362 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 MRPS30Q9NP92 439 aaKnown RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 COQ3Q9NZJ6 369 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ARPC2O15144 300 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 VIPP01282 170 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 VTNP04004 478 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 DHRS4L1P0CG22 281 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 PTPN2P17706 415 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 CRABP1P29762 137 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RNF144AP50876 292 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 CEBPGP53567 150 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 PTPRCAPQ14761 206 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SVBPQ8N300 66 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 HTRA1Q92743 480 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SLC19A3Q9BZV2 496 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 GJB4Q9NTQ9 266 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ZNF219Q9P2Y4 722 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 TGFB1P01137 390 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 PIPP12273 146 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 PCBD1P61457 104 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 GXYLT1Q4G148 440 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 FAM83HQ6ZRV2 1179 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 SC5DO75845 299 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 CHMP24386 653 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 EDNRBP24530 442 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 CCR4P51679 360 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 CDK6Q00534 326 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 DUSP4Q13115 394 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 GPR17Q13304 367 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 TIGD5Q53EQ6 642 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RAET1GQ6H3X3 334 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 PCED1AQ9H1Q7 454 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 FBXO6Q9NRD1 293 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 CHKBQ9Y259 395 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 DLGAP4Q9Y2H0 992 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SMIM28A0A1B0GU29 152 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ARL5CA6NH57 179 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 C4orf47A7E2U8 309 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ZNF670-ZNF695F2Z2N8 137 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 BDNFP23560 247 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 NRLP54845 237 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ZBTB8BQ8NAP8 495 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 PPP1R35Q8TAP8 253 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 LENG8Q96PV6 779 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 C8orf33Q9H7E9 229 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 ASB6Q9NWX5 421 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SRPK3Q9UPE1 567 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 MOKQ9UQ07 419 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 NUBP2Q9Y5Y2 271 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 STRCP1A6NGW2 1772 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 A0A0D9SG52 128 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 MAN2B1O00754 1011 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SSR2P43308 183 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ZNF234Q14588 700 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 MTFR2Q6P444 385 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 RFPL4BQ6ZWI9 263 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 AMIGO1Q86WK6 493 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SMAP2Q8WU79 429 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 NANOS1Q8WY41 292 aaKnown RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 DUS3LQ96G46 650 aaKnown RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 WACQ9BTA9 647 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 PATZ1Q9HBE1 687 aaKnown RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 ST6GALNAC1Q9NSC7 600 aaPredicted RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 CMAHPQ9Y471 501 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 KNTC1P50748 2209 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 C9J4A7 227 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 GFRA2O00451 464 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 DAP3P51398 398 aaKnown RBP3.87□□□□□ -1.79
USH2A-201ENST00000307340 SLC5A3P53794 718 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 TARDBPQ13148 414 aaKnown RBP eCLIP3.87□□□□□ -1.79
USH2A-201ENST00000307340 RAB30Q15771 203 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 ZER1Q7Z7L7 766 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 SLC34A3Q8N130 599 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 COPS5Q92905 334 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 C1GALT1C1Q96EU7 318 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 KLHL5Q96PQ7 755 aa3.87□□□□□ -1.79
USH2A-201ENST00000307340 DNAJC5Q9H3Z4 198 aa3.87□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms