RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 A0A0D9SEW6 157 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 PSMD9O00233 223 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 PCDH17O14917 1159 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 MITFO75030 526 aaPredicted RBP12.37□□□□□ -0.43
COL3A1-201ENST00000304636 H2AFB2P0C5Z0 115 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 PTPN2P17706 415 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 FSHRP23945 695 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 DCTP40126 519 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 KIF18BQ86Y91 864 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 ABCG5Q9H222 651 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 METTL8Q9H825 291 aaKnown RBP12.37□□□□□ -0.43
COL3A1-201ENST00000304636 SCP2D1Q9UJQ7 156 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 NDUFS4O43181 175 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 TFAP2AP05549 437 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 GPX3P22352 226 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 TIA1P31483 386 aaKnown RBP eCLIP12.37□□□□□ -0.43
COL3A1-201ENST00000304636 SLC5A2P31639 672 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 MAGEA12P43365 314 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 E2F1Q01094 437 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 RASGEF1BQ0VAM2 473 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 FAM189A2Q15884 450 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 FAAH2Q6GMR7 532 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 RGMBQ6NW40 437 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 VWA5B2Q8N398 1253 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 DTWD1Q8N5C7 304 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 OR52B6Q8NGF0 335 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 OR9A1PQ8NGU1 263 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 OR10T2Q8NGX3 314 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 HCN3Q9P1Z3 774 aa12.37□□□□□ -0.43
COL3A1-201ENST00000304636 SLC35F4A4IF30 521 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 BEST1O76090 585 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 JUPP14923 745 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 SLC25A25Q6KCM7 469 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 HAGHLQ6PII5 290 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 TMED4Q7Z7H5 227 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 OR2AJ1Q8NGZ0 328 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 RAB8BQ92930 207 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 DISC1C4P0D8 188 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ARHGEF15O94989 841 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 HTR1AP08908 422 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ZBTB48P10074 688 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF20P17024 532 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 HMBOX1Q6NT76 420 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 PIWIL3Q7Z3Z3 882 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 COQ8BQ96D53 544 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 AIFM2Q9BRQ8 373 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 HAPLN2Q9GZV7 340 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 SOCS5O75159 536 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ATE1O95260 518 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 IFNA21P01568 189 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ACRV1P26436 265 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 CCSAPQ6IQ19 270 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 PGM2L1Q6PCE3 622 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 GDPGP1Q6ZNW5 385 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 UBQLNLQ8IYU4 475 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 HS3ST5Q8IZT8 346 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 NPWQ8N729 165 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 DEDD2Q8WXF8 326 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ARNTL2Q8WYA1 636 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 FUBP1Q96AE4 644 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 DPH2Q9BQC3 489 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 GPN2Q9H9Y4 310 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ANKMY1Q9P2S6 941 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 AGAP5A6NIR3 686 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 UPK3BL1B0FP48 263 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 UPK3BL2E5RIL1 263 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF821O75541 412 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 POP7O75817 140 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 OXTRP30559 389 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ARSDP51689 593 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ARFRP1Q13795 201 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 EIF4HQ15056 248 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 GRK1Q15835 563 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 TOR1AIP1Q5JTV8 583 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 PAGE3Q5JUK9 113 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF783Q6ZMS7 281 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 LRRTM4Q86VH4 590 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 IFNLR1Q8IU57 520 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 TIGD4Q8IY51 512 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 PM20D2Q8IYS1 436 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 OR2T33Q8NG76 320 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 SNIP1Q8TAD8 396 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 SETD6Q8TBK2 473 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 FANK1Q8TC84 345 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 NXPE2Q96DL1 559 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 MCHR1Q99705 422 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 YIPF1Q9Y548 306 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 RBMXL2O75526 392 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 VAMP1P23763 118 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 S100A2P29034 98 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 LASP1Q14847 261 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 NTRK2Q16620 822 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 DESI1Q6ICB0 168 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 NETO1Q8TDF5 533 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 ZFP90Q8TF47 636 aa12.36□□□□□ -0.43
COL3A1-201ENST00000304636 DPCDQ9BVM2 203 aaPredicted RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 PPIL3Q9H2H8 161 aaKnown RBP12.36□□□□□ -0.43
COL3A1-201ENST00000304636 MYH15Q9Y2K3 1946 aa12.35□□□□□ -0.43
COL3A1-201ENST00000304636 MYH3P11055 1940 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms