RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 DMWDQ09019 674 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 SLC36A4Q6YBV0 504 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 DCUN1D3Q8IWE4 304 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 OR5T1Q8NG75 326 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 CPT1CQ8TCG5 803 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 HM13Q8TCT9 377 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 RBM24Q9BX46 236 aaKnown RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 GGT3PA6NGU5 568 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 BTNL10A8MVZ5 291 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 COL6A2P12110 1019 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF30P17039 623 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 FAUP35544 74 aaKnown RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 CDH11P55287 796 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 DUOXA1Q1HG43 343 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 RPS26P11Q5JNZ5 115 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 NRROSQ86YC3 692 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 LAS2Q8IYD9 372 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 PQLC1Q8N2U9 271 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 RASGEF1CQ8N431 466 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 AP3S1Q92572 193 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 FAM83CQ9BQN1 747 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 FN3KQ9H479 309 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF69Q9UC07 566 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 NUFIP1Q9UHK0 495 aaKnown RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF451Q9Y4E5 1061 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 ADGRB1O14514 1584 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 A0A1B0GVI7 797 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 GPR39O43194 453 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 GATBO75879 557 aaKnown RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 ACRV1P26436 265 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 FOLR3P41439 243 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 GPR4P46093 362 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 FXYD6P3P58550 94 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 CRYZQ08257 329 aaKnown RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 PRAMEF17Q5VTA0 474 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 TMEM110Q86TL2 294 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 S100ZQ8WXG8 99 aa7.5□□□□□ -1.21
SCN9A-201ENST00000303354 SAT2Q96F10 170 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 ZFRQ96KR1 1074 aaKnown RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 DPH2Q9BQC3 489 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 NLE1Q9NVX2 485 aaPredicted RBP7.5□□□□□ -1.21
SCN9A-201ENST00000303354 CLCA1A8K7I4 914 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 EGFP01133 1207 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF35P13682 527 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 TSTQ16762 297 aaKnown RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 TIGD6Q17RP2 521 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 FAM214AQ32MH5 1076 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 SYT14Q8NB59 555 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 RIT1Q92963 219 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 EPYCQ99645 322 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 MCHR1Q99705 422 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 LUZP4Q9P127 313 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PADI2Q9Y2J8 665 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 C15orf41Q9Y2V0 281 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 BCL9LQ86UU0 1499 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 CD9P21926 228 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 OXTRP30559 389 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 EGFLAMQ63HQ2 1017 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 KBTBD8Q8NFY9 601 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 DCAKDQ8WVC6 231 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 DMAC2Q9NW81 257 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 OAS1P00973 400 aaKnown RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 VBP1P61758 197 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 TRAP1Q12931 704 aaKnown RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 SLC5A9Q2M3M2 681 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PLXDC1Q8IUK5 500 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 DNAJA4Q8WW22 397 aaPredicted RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PITX2Q99697 317 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 GAREM1Q9H706 876 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 MARCH4Q9P2E8 410 aaPredicted RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 ZNF639Q9UID6 485 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 MGAT4AQ9UM21 535 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 TRBV11-1A0A0K0K1C0 115 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 BRINP1O60477 761 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PROS1P07225 676 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PSMB5P28074 263 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 GPR137CQ8N3F9 429 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PDPRQ8NCN5 879 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 FANK1Q8TC84 345 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 TWSG1Q9GZX9 223 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 FOLH1BQ9HBA9 442 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 EIF3KQ9UBQ5 218 aaKnown RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 RAB21Q9UL25 225 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 RAB27BO00194 218 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PEX2P28328 305 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 GSTT1P30711 240 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 HSD17B2P37059 387 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 EEFSECP57772 596 aaKnown RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 ZP2Q05996 745 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 SLC10A2Q12908 348 aaPredicted RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 TIGD4Q8IY51 512 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 NINJ1Q92982 152 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 PGAM5Q96HS1 289 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 OR6C1Q96RD1 312 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 RNPEPL1Q9HAU8 725 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 CKMT2P17540 419 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 HNRNPA2B1P22626 353 aaKnown RBP7.49□□□□□ -1.21
SCN9A-201ENST00000303354 WNT7BP56706 349 aa7.49□□□□□ -1.21
SCN9A-201ENST00000303354 RAB2AP61019 212 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms