RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 ROGDIQ9GZN7 287 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 ZNF700Q9H0M5 742 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 SLC25A18Q9H1K4 315 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 TNFRSF12AQ9NP84 129 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 MID1IP1Q9NPA3 183 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 NECTIN3Q9NQS3 549 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 MID2Q9UJV3 735 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 FBXW2Q9UKT8 454 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 TIMM22Q9Y584 194 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 NUP210LQ5VU65 1888 aa12.57□□□□□ -0.4
VPS28-201ENST00000292510 NSG1A0A0A6YYJ2 146 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 MYOCOSA0A1B0GUC4 107 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 A0A1W2PQ72 361 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 TGFBR3LH3BV60 316 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 CYR61O00622 381 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 ESRRBO95718 433 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 GBAP04062 536 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 CYC1P08574 325 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 HMOX2P30519 316 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 BSGP35613 385 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 PKNOX1P55347 436 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 AIMP2Q13155 320 aaKnown RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 SLAMF1Q13291 335 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 CUL3Q13618 768 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 LACTB2Q53H82 288 aaPredicted RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 SFT2D3Q587I9 215 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 TNFAIP8L3Q5GJ75 292 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 SCIMPQ6UWF3 145 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 QSOX2Q6ZRP7 698 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 CLNKQ7Z7G1 428 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 PTRH1Q86Y79 214 aaKnown RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 VPS50Q96JG6 964 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 MAGEB10Q96LZ2 347 aaPredicted RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 SERPINI1Q99574 410 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 WDR77Q9BQA1 342 aaPredicted RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 CENPKQ9BS16 269 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 MRPL1Q9BYD6 325 aaKnown RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 PRDM9Q9NQV7 894 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 PSD3Q9NYI0 1048 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 GPR83Q9NYM4 423 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 KCMF1Q9P0J7 381 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 SENP1Q9P0U3 644 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 C19orf25Q9UFG5 118 aaPredicted RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 SNX6Q9UNH7 406 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 SLC12A4Q9UP95 1085 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 STK38LQ9Y2H1 464 aa12.56□□□□□ -0.4
VPS28-201ENST00000292510 PCDHGA9Q9Y5G4 932 aaKnown RBP12.56□□□□□ -0.4
VPS28-201ENST00000292510 IGKV3D-11A0A0A0MRZ8 115 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 A8MUA0 341 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 PCDH17O14917 1159 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 CTIFO43310 598 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 TMPRSS11DO60235 418 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 TRIM13O60858 407 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 PRKRAO75569 313 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 SFTPCP11686 197 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 CHN1P15882 459 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 SERPINB3P29508 390 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 HNRNPH2P55795 449 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 OR4D2P58180 307 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 CASP8Q14790 479 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 MYBPC3Q14896 1274 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 TCTN3Q6NUS6 607 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 PAPD4Q6PIY7 484 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 ZCCHC23Q6ZST2 131 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 ASB18Q6ZVZ8 466 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 ZCCHC7Q8N3Z6 543 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 ZNF843Q8N446 348 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 EFCAB3Q8N7B9 438 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 MYRIPQ8NFW9 859 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 THOC3Q96J01 351 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 IMMP1LQ96LU5 166 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 SLC29A3Q9BZD2 475 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 ZNF552Q9H707 407 aaPredicted RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 LYRM4Q9HD34 91 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 MLXIPLQ9NP71 852 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 PRTFDC1Q9NRG1 225 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 RIC8BQ9NVN3 520 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 PPT2Q9UMR5 302 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 CLDN16Q9Y5I7 305 aa12.55□□□□□ -0.4
VPS28-201ENST00000292510 TNRC6AQ8NDV7 1962 aaKnown RBP12.55□□□□□ -0.4
VPS28-201ENST00000292510 COL6A6A6NMZ7 2263 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 A0A0A6YYD5 115 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 LDB3O75112 727 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ULK1O75385 1050 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 SEMA3DO95025 777 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 KRT6AP02538 564 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 KRT6BP04259 564 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ENO1P06733 434 aaKnown RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 MYZAPP0CAP1 466 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 CPN2P22792 545 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 PPP2R1BP30154 601 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ETV4P43268 484 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 TSFMP43897 325 aaKnown RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 KRT6CP48668 564 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 PGDP52209 483 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 SOX8P57073 446 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ID2Q02363 134 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 ACTN3Q08043 901 aaPredicted RBP12.54□□□□□ -0.4
VPS28-201ENST00000292510 SLC13A2Q13183 592 aa12.54□□□□□ -0.4
VPS28-201ENST00000292510 MPP2Q14168 576 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms