RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CLCA4Q14CN2 919 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 ABRAXAS1Q6UWZ7 409 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 RASGRP3Q8IV61 690 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 NFKBIDQ8NI38 313 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 SORBS1Q9BX66 1292 aaKnown RBP11.06□□□□□ -0.64
VPS4A-201ENST00000254950 PRTFDC1Q9NRG1 225 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 PLCL2Q9UPR0 1127 aa11.06□□□□□ -0.64
VPS4A-201ENST00000254950 SLC9B1P1A6NJY1 282 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 PAPLNO95428 1278 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CSNK1G2P78368 415 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 GTDC1Q4AE62 458 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CES4AQ5XG92 561 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CAPRIN2Q6IMN6 1127 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM214Q6NUQ4 689 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 PLEKHM3Q6ZWE6 761 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CCL4L1Q8NHW4 92 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 GAL3ST4Q96RP7 486 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 SERINC2Q96SA4 455 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 RBM4BQ9BQ04 359 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 RBM4Q9BWF3 364 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 POLR1BQ9H9Y6 1135 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 BTNL2Q9UIR0 455 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 C9J4A7 227 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 SMNDC1O75940 238 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CLPTM1O96005 669 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 OPN1SWP03999 348 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 IL7RP16871 459 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 DDCP20711 480 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 HIST1H1TP22492 207 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 IDH2P48735 452 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 OR4D2P58180 307 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 TRA2BP62995 288 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 SVOPLQ8N434 492 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 NAT6Q93015 286 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MACROD1Q9BQ69 325 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MS4A8Q9BY19 250 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 RBCK1Q9BYM8 510 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 NKX1-2Q9UD57 310 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 GMPPBQ9Y5P6 360 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MIA3Q5JRA6 1907 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 ALPPP05187 535 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MATN1P21941 496 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CERS1P27544 350 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 GCKP35557 465 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 RPS9P46781 194 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MAPK10P53779 464 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 SIM1P81133 766 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 TIAL1Q01085 375 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 PDK3Q15120 406 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 REEP3Q6NUK4 255 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF551Q7Z340 670 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MCATQ8IVS2 390 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CYP4Z2PQ8N1L4 340 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 LRRC25Q8N386 305 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 ARL10Q8N8L6 244 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 MFSD9Q8NBP5 474 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 RAB8BQ92930 207 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF347Q96SE7 839 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 SPATA9Q9BWV2 254 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 PNO1Q9NRX1 252 aaKnown RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 CMTM6Q9NX76 183 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 PDP1Q9P0J1 537 aaPredicted RBP11.05□□□□□ -0.64
VPS4A-201ENST00000254950 ADAM29Q9UKF5 820 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 PCDHB14Q9Y5E9 798 aa11.05□□□□□ -0.64
VPS4A-201ENST00000254950 SPTY2D1-AS1A0A0U1RR47 76 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 KLK3P07288 261 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 FHP07954 510 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF888P0CJ79 500 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CA5AP35218 305 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM126BQ8IUX1 230 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ZNF547Q8IVP9 402 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 DPP10Q8N608 796 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 METTL27Q8N6F8 245 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 OR6C4Q8NGE1 309 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 TMEM125Q96AQ2 219 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 PYURFQ96I23 114 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 INPP5KQ9BT40 448 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 VAPAQ9P0L0 249 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 TESMINQ9Y4I5 508 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 GABRR3A8MPY1 467 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 EMC8O43402 210 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 PEX1O43933 1283 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 HOXC4P09017 264 aaPredicted RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 CHRNB1P11230 501 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 PSMD4P55036 377 aaKnown RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 MC1RQ01726 317 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 DMPKQ09013 629 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 MLIPQ5VWP3 458 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 GALNT18Q6P9A2 607 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ZC3H14Q6PJT7 736 aaKnown RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ERMP1Q7Z2K6 904 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 C6orf120Q7Z4R8 191 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 PIK3C3Q8NEB9 887 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ADAMTS18Q8TE60 1221 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 GEMIN6Q8WXD5 167 aaKnown RBP11.04□□□□□ -0.64
VPS4A-201ENST00000254950 BTBD9Q96Q07 612 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 ACTL8Q9H568 366 aa11.04□□□□□ -0.64
VPS4A-201ENST00000254950 NT5DC2Q9H857 520 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms