RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 FAM83FQ8NEG4 500 aaPredicted RBP17.89■□□□□ 0.45
CPSF3-201ENST00000238112 CDCA4Q9BXL8 241 aa17.89■□□□□ 0.45
CPSF3-201ENST00000238112 ITM2CQ9NQX7 267 aa17.89■□□□□ 0.45
CPSF3-201ENST00000238112 CNOT2Q9NZN8 540 aaKnown RBP17.89■□□□□ 0.45
CPSF3-201ENST00000238112 RHCGQ9UBD6 479 aa17.89■□□□□ 0.45
CPSF3-201ENST00000238112 OGDHLQ9ULD0 1010 aa17.89■□□□□ 0.45
CPSF3-201ENST00000238112 SLC6A14Q9UN76 642 aa17.89■□□□□ 0.45
CPSF3-201ENST00000238112 SNX8Q9Y5X2 465 aa17.89■□□□□ 0.45
CPSF3-201ENST00000238112 ZW10O43264 779 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 ALOX12P18054 663 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 POU1F1P28069 291 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 UNC5DQ6UXZ4 953 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 TRMT11Q7Z4G4 463 aaKnown RBP17.88■□□□□ 0.45
CPSF3-201ENST00000238112 HEATR4Q86WZ0 1026 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 NRSN1Q8IZ57 195 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 TCEAL4Q96EI5 215 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 NLNQ9BYT8 704 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 ZCCHC2Q9C0B9 1178 aaKnown RBP17.88■□□□□ 0.45
CPSF3-201ENST00000238112 EPHX3Q9H6B9 360 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 CCDC177Q9NQR7 707 aaPredicted RBP17.88■□□□□ 0.45
CPSF3-201ENST00000238112 TDP1Q9NUW8 608 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 DKK3Q9UBP4 350 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 ARRDC5A6NEK1 342 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 PTTG1O95997 202 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 GASTP01350 101 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 SYN1P17600 705 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 CHMP24386 653 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 GTF2E2P29084 291 aaKnown RBP17.88■□□□□ 0.45
CPSF3-201ENST00000238112 WEE1P30291 646 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 CRISP1P54107 249 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 TAP2Q03519 686 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 TLE2Q04725 743 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 TEAD2Q15562 447 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 LILRA6Q6PI73 481 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 KLHL17Q6TDP4 642 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 UBE2E3Q969T4 207 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 DEFB118Q96PH6 123 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 MGLLQ99685 303 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 SLC6A16Q9GZN6 736 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 SPNS1Q9H2V7 528 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 NMNAT1Q9HAN9 279 aaPredicted RBP17.88■□□□□ 0.45
CPSF3-201ENST00000238112 PCDHGA4Q9Y5G9 962 aa17.88■□□□□ 0.45
CPSF3-201ENST00000238112 ZAR1LA6NP61 321 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 FGF18O76093 207 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 ADH1AP07327 375 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 UQCRC2P22695 453 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 PIK3CBP42338 1070 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 TSTQ16762 297 aaKnown RBP17.87■□□□□ 0.45
CPSF3-201ENST00000238112 PRSS53Q2L4Q9 553 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 TOR1AIP1Q5JTV8 583 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 REEP3Q6NUK4 255 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 IKBIPQ70UQ0 350 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 ZNF366Q8N895 744 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 LRIG1Q96JA1 1093 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 OR5M11Q96RB7 305 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 OR2AG1Q9H205 316 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 FTSJ1Q9UET6 329 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 ATP11BQ9Y2G3 1177 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 PCM1Q15154 2024 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 PNMA8CA0A1B0GUJ8 204 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 C5orf58C9J3I9 102 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 SNPHO15079 494 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 KIAA0513O60268 411 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 KLHL18O94889 574 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 CNR2P34972 360 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 LIMK1P53667 647 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 KRR1Q13601 381 aaKnown RBP17.87■□□□□ 0.45
CPSF3-201ENST00000238112 TRIM60Q495X7 471 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 ZNF658BQ4V348 819 aaPredicted RBP17.87■□□□□ 0.45
CPSF3-201ENST00000238112 BCL7AQ4VC05 210 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 SPANXN2Q5MJ10 180 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 FRMPD2BQ6IN97 320 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 PARS2Q7L3T8 475 aaKnown RBP17.87■□□□□ 0.45
CPSF3-201ENST00000238112 NLGN4XQ8N0W4 816 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 WDR36Q8NI36 951 aaKnown RBP17.87■□□□□ 0.45
CPSF3-201ENST00000238112 YME1L1Q96TA2 773 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 CFL2Q9Y281 166 aa17.87■□□□□ 0.45
CPSF3-201ENST00000238112 ABHD14A-ACY1A0A1B0GW23 586 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 CCRL2O00421 344 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 KPNA3O00505 521 aaPredicted RBP17.86■□□□□ 0.45
CPSF3-201ENST00000238112 HAT1O14929 419 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 CXCL14O95715 111 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 SELENBP1Q13228 472 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 DUSP7Q16829 419 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 PLAG1Q6DJT9 500 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 CEACAM20Q6UY09 585 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 AKAP14Q86UN6 197 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 ZNF740Q8NDX6 193 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 FAM46DQ8NEK8 389 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 VWCEQ96DN2 955 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 DTD2Q96FN9 168 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 TXNDC15Q96J42 360 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 TAAR2Q9P1P5 351 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 TBC1D14Q9P2M4 693 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 MKLN1Q9UL63 735 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 HTR3EA5X5Y0 456 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 PSMD11O00231 422 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 ARHGAP15Q53QZ3 475 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 SLC39A5Q6ZMH5 540 aa17.86■□□□□ 0.45
CPSF3-201ENST00000238112 KIAA0907Q7Z7F0 614 aaPredicted RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms