RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CNPPD1Q9BV87 410 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 NMNAT1Q9HAN9 279 aaPredicted RBP10.21□□□□□ -0.77
USP28-201ENST00000003302 TIGARQ9NQ88 270 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 TMEM45AQ9NWC5 275 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 FKBP14Q9NWM8 211 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 TAAR2Q9P1P5 351 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 SRRDQ9UH36 339 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 PCDHGA3Q9Y5H0 932 aa10.21□□□□□ -0.77
USP28-201ENST00000003302 A0A0B4J293 547 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 SOCS5O75159 536 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 SOD2P04179 222 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 RFX2P48378 723 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 PIN1Q13526 163 aaPredicted RBP10.21□□□□□ -0.78
USP28-201ENST00000003302 SCARB2Q14108 478 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 TMEM220Q6QAJ8 160 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 SETD9Q8NE22 299 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 STARD8Q92502 1023 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 RNF31Q96EP0 1072 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 OPALINQ96PE5 141 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 TSEN34Q9BSV6 310 aaKnown RBP10.21□□□□□ -0.78
USP28-201ENST00000003302 PRRG3Q9BZD7 231 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 HOXD1Q9GZZ0 328 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 FAM83DQ9H4H8 585 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 HIDE1A8MVS5 230 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 SLCO2B1O94956 709 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 ACRP10323 421 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 TM4SF4P48230 202 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 CXCR4P61073 352 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 LRRC74AQ0VAA2 488 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 TOP3AQ13472 1001 aaPredicted RBP10.21□□□□□ -0.78
USP28-201ENST00000003302 RASGRP3Q8IV61 690 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 HORMAD2Q8N7B1 307 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 SIMC1Q8NDZ2 872 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 ING5Q8WYH8 240 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 MGLLQ99685 303 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 SLX1AQ9BQ83 275 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 YIPF4Q9BSR8 244 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 UGT2A1Q9Y4X1 527 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 NOX1Q9Y5S8 564 aa10.21□□□□□ -0.78
USP28-201ENST00000003302 MGAT4DA6NG13 374 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 CLDN24A6NM45 220 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 OR12D1P0DN82 309 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 TIMP2P16035 220 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 TRPC1P48995 793 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 ARHGDIAP52565 204 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 LRRC26Q2I0M4 334 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 LY6G5CQ5SRR4 150 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 HENMT1Q5T8I9 393 aaKnown RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 ZNF770Q6IQ21 691 aaPredicted RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 CEACAM20Q6UY09 585 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 USP45Q70EL2 814 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 CBARPQ8N350 705 aaPredicted RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 ELAC1Q9H777 363 aaKnown RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 KCNK12Q9HB15 430 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 EXOSC4Q9NPD3 245 aaKnown RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 CUEDC1Q9NWM3 386 aaPredicted RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 PADI2Q9Y2J8 665 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 GPR52Q9Y2T5 361 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 SNPHO15079 494 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 EPPINO95925 133 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 CSF2P04141 144 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 FURINP09958 794 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 CASP3P42574 277 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 C2orf80Q0P641 193 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 TMEM115Q12893 351 aaPredicted RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 IL18R1Q13478 541 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 MICAQ29983 383 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 RFX4Q33E94 735 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 OR2G6Q5TZ20 316 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 RAET1EQ8TD07 263 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 TRMT2BQ96GJ1 504 aaKnown RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 EMILIN2Q9BXX0 1053 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 HS3ST2Q9Y278 367 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 PCDHGB6Q9Y5F9 930 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 BACE2Q9Y5Z0 518 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 PLXNA2O75051 1894 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 M0R3H8 397 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 PSIP1O75475 530 aaKnown RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 BCHEP06276 602 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 STX19Q8N4C7 294 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 IL17RDQ8NFM7 739 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 CSGALNACT1Q8TDX6 532 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 MRPL17Q9NRX2 175 aaKnown RBP10.2□□□□□ -0.78
USP28-201ENST00000003302 FTSJ1Q9UET6 329 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 SLC23A2Q9UGH3 650 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 TMEM98Q9Y2Y6 226 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 PCDHGB3Q9Y5G1 929 aa10.2□□□□□ -0.78
USP28-201ENST00000003302 SEMA3DO95025 777 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TYRP14679 529 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TIA1P31483 386 aaKnown RBP eCLIP10.19□□□□□ -0.78
USP28-201ENST00000003302 LIMS1P48059 325 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 COPZ1P61923 177 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 DMC1Q14565 340 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 TBCEQ15813 527 aaPredicted RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 WDR36Q8NI36 951 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 COQ8BQ96D53 544 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 FYTTD1Q96QD9 318 aaKnown RBP10.19□□□□□ -0.78
USP28-201ENST00000003302 OR2AG1Q9H205 316 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 NTNG1Q9Y2I2 539 aa10.19□□□□□ -0.78
USP28-201ENST00000003302 CNTRLQ7Z7A1 2325 aa10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms