RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RCHY1Q96PM5 261 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PCDHB18PQ96TA0 734 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SLF1Q9BQI6 1058 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NAA11Q9BSU3 229 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 PAXXQ9BUH6 204 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KATNB1Q9BVA0 655 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PAPOLGQ9BWT3 736 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 APOL6Q9BWW8 343 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PINK1Q9BXM7 581 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TEX13BQ9BXU2 312 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PRRG4Q9BZD6 226 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 FAM49AQ9H0Q0 323 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 UBQLN3Q9H347 655 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 LIME1Q9H400 295 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RIMS4Q9H426 269 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 FN3KQ9H479 309 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 IKZF5Q9H5V7 419 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ASB8Q9H765 288 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MOB1AQ9H8S9 216 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MARCH7Q9H992 704 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 RAB9BQ9NP90 201 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KCNMB3Q9NPA1 279 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MRPL17Q9NRX2 175 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 PNPLA3Q9NST1 481 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 DEPPQ9NTK1 212 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MRGBPQ9NV56 204 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 EXOC1Q9NV70 894 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MIS18AQ9NYP9 233 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PKD2L2Q9NZM6 624 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 THYN1Q9P016 225 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 TBC1D7Q9P0N9 293 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 DHRS4-AS1Q9P1J3 65 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 KLK11Q9UBX7 282 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 POLLQ9UGP5 575 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 PPIEQ9UNP9 301 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 PLCL2Q9UPR0 1127 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 SATB2Q9UPW6 733 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 NAALAD2Q9Y3Q0 740 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 HBS1LQ9Y450 684 aaKnown RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 CCL27Q9Y4X3 112 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 ARID4BQ4LE39 1312 aaPredicted RBP0.3□□□□□ -2.36
VPS35-212ENST00000640313 NPHP3Q7Z494 1330 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 POGZQ7Z3K3 1410 aa0.3□□□□□ -2.36
VPS35-212ENST00000640313 MEGF6O75095 1541 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SPATA31D1Q6ZQQ2 1576 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MYH14Q7Z406 1995 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 IGHV3-35A0A0C4DH35 117 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KIR2DL5BA0A0G2JN68 375 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KIR2DL5BA0A0G2JPC4 375 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 KLF18A0A0U1RQI7 1052 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 A0A1B0GTH9 108 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 LOC390937A0A1W2PQ73 354 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 WI2-2373I1.2A0A1W2PRP0 233 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ILVBLA1L0T0 632 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ANXA2P2A6NMY6 339 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 TMEM150CB9EJG8 249 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 E5RGE8 158 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NPIPA3F8WFD2 350 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PDHXO00330 501 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 FBP2O00757 339 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SLC30A4O14863 429 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PGRMC2O15173 223 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 OGTO15294 1046 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ST8SIA3O43173 380 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PPIP5K2O43314 1243 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF861PO60384 105 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ACSL4O60488 711 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 NME6O75414 186 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 GGPS1O95749 300 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 FGF19O95750 216 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MOCS2O96007 188 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 PENKP01210 267 aaPredicted RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 IGHV3-9P01782 118 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 C9P02748 559 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 LDHCP07864 332 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 FHP07954 510 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 STAG3L1P0CL83 205 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SPP1P10451 314 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PRKAR1AP10644 381 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 EEF2P13639 858 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 CD1DP15813 335 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ZNF17P17021 662 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GOT1P17174 413 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ERCC2P18074 760 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 EPORP19235 508 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 ELK1P19419 428 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 BDNFP23560 247 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 EEF1B2P24534 225 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 ACKR3P25106 362 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 PSMA3P25788 255 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GIFP27352 417 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 GJB2P29033 226 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 HSPA4P34932 840 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SFTPDP35247 375 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 MDH2P40926 338 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 CASP2P42575 452 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 SLC1A4P43007 532 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 CRKLP46109 303 aaKnown RBP0.29□□□□□ -2.36
VPS35-212ENST00000640313 CAPZA2P47755 286 aa0.29□□□□□ -2.36
VPS35-212ENST00000640313 OR3A3P47888 321 aa0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms