RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 HSPA4P34932 840 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 SPRP35270 261 aaPredicted RBP2.84□□□□□ -1.95
CD44-239ENST00000639002 RPL34P49207 117 aaKnown RBP2.84□□□□□ -1.95
CD44-239ENST00000639002 IST1P53990 364 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 TNK1Q13470 666 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 ECSCRQ19T08 205 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 ZRANB3Q5FWF4 1079 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 VWA2Q5GFL6 755 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 NEPROQ6NW34 567 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 VASH2Q86V25 355 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 CROCCP3Q8IVE0 287 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 LIPHQ8WWY8 451 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 FAM129AQ9BZQ8 928 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 MAF1Q9H063 256 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 LIME1Q9H400 295 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 RPF1Q9H9Y2 349 aaKnown RBP2.84□□□□□ -1.95
CD44-239ENST00000639002 RAB9BQ9NP90 201 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 BCCIPQ9P287 314 aaKnown RBP eCLIP2.84□□□□□ -1.95
CD44-239ENST00000639002 RUVBL2Q9Y230 463 aaKnown RBP2.84□□□□□ -1.95
CD44-239ENST00000639002 NCKAP1Q9Y2A7 1128 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 CPQQ9Y646 472 aa2.84□□□□□ -1.95
CD44-239ENST00000639002 KLF18A0A0U1RQI7 1052 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 BCLAF3A2AJT9 711 aaKnown RBP2.83□□□□□ -1.96
CD44-239ENST00000639002 UBE2CO00762 179 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 HDAC3O15379 428 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 SH3BP5O60239 455 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 SPP1P10451 314 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 PSMA3P25788 255 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 PSMB4P28070 264 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 CNTN1Q12860 1018 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 MAPK11Q15759 364 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 KYNUQ16719 465 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 TTC31Q49AM3 519 aaPredicted RBP2.83□□□□□ -1.96
CD44-239ENST00000639002 ZNF770Q6IQ21 691 aaPredicted RBP2.83□□□□□ -1.96
CD44-239ENST00000639002 KLHL10Q6JEL2 608 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 ARMCX5Q6P1M9 558 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 ZNF600Q6ZNG1 722 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 NUFIP2Q7Z417 695 aaKnown RBP2.83□□□□□ -1.96
CD44-239ENST00000639002 SMPDL3AQ92484 453 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 RAD54LQ92698 747 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 NTNG2Q96CW9 530 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 RMDN2Q96LZ7 410 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 ZNF446Q9NWS9 450 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 ITGA11Q9UKX5 1188 aa2.83□□□□□ -1.96
CD44-239ENST00000639002 CFAP65Q6ZU64 1925 aaKnown RBP2.83□□□□□ -1.96
CD44-239ENST00000639002 E7ENQ6 273 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 P2RX6O15547 441 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 OR3A3P47888 321 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 PEX3P56589 373 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 RBBP4Q09028 425 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 LRRC73Q5JTD7 316 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 C6orf136Q5SQH8 315 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 DDX59Q5T1V6 619 aaKnown RBP eCLIP2.82□□□□□ -1.96
CD44-239ENST00000639002 CFAP58Q5T655 872 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 PPP1R21Q6ZMI0 780 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 C17orf107Q6ZR85 190 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 ABI3BPQ7Z7G0 1075 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 TBC1D10CQ8IV04 446 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 PRR22Q8IZ63 422 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 OR6J1Q8NGC5 347 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 OCC1Q8TAD7 63 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 PCNPQ8WW12 178 aaKnown RBP2.82□□□□□ -1.96
CD44-239ENST00000639002 PPP1R16AQ96I34 528 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 ZNF285Q96NJ3 590 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 SLC25A23Q9BV35 468 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 DEFB126Q9BYW3 111 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 UBQLN3Q9H347 655 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 DPEP2Q9H4A9 486 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 MGAT4AQ9UM21 535 aa2.82□□□□□ -1.96
CD44-239ENST00000639002 SYNDIG1LA6NDD5 238 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 FOXI3A8MTJ6 420 aaPredicted RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 ZNF724A8MTY0 619 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 FLRT2O43155 660 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 FGF19O95750 216 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 LBPP18428 481 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 ADARP55265 1226 aaKnown RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 FASTKQ14296 549 aaKnown RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 ZNF273Q14593 569 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 PPA1Q15181 289 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 C17orf58Q2M2W7 97 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 PLPP4Q5VZY2 271 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 SLC27A4Q6P1M0 643 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 CCDC71Q8IV32 467 aaPredicted RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 TDHQ8IZJ6 230 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 NCOA7Q8NI08 942 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 SAP25Q8TEE9 199 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 GRK7Q8WTQ7 553 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 MCCC1Q96RQ3 725 aaPredicted RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 SLF1Q9BQI6 1058 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 NAA11Q9BSU3 229 aaPredicted RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 PNNQ9H307 717 aaKnown RBP2.81□□□□□ -1.96
CD44-239ENST00000639002 FBXO7Q9Y3I1 522 aa2.81□□□□□ -1.96
CD44-239ENST00000639002 ZSCAN5CA6NGD5 496 aaPredicted RBP2.8□□□□□ -1.96
CD44-239ENST00000639002 FCGR3BO75015 233 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 TBX10O75333 385 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 DNTTP04053 509 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 ANKRD34CP0C6C1 535 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 ERCC2P18074 760 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 MEOX2P50222 304 aa2.8□□□□□ -1.96
CD44-239ENST00000639002 PTENP60484 403 aa2.8□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms