RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 AQP12BA6NM10 295 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 H0YGG7 62 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 TBX19O60806 448 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 EPN2O95208 641 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 C6orf47O95873 294 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 FAM58BPP0C7Q3 252 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 ST6GAL1P15907 406 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 ENGP17813 658 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 TSFMP43897 325 aaKnown RBP16.02■□□□□ 0.16
CLN3-252ENST00000636907 ALDH9A1P49189 494 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 ARF3P61204 181 aaPredicted RBP16.02■□□□□ 0.16
CLN3-252ENST00000636907 SNRPNP63162 240 aaKnown RBP16.02■□□□□ 0.16
CLN3-252ENST00000636907 TGM3Q08188 693 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 SLAMF1Q13291 335 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 SLC9A5Q14940 896 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 C6orf132Q5T0Z8 1188 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 MRM1Q6IN84 353 aaKnown RBP16.02■□□□□ 0.16
CLN3-252ENST00000636907 CALHM3Q86XJ0 350 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 AQP12AQ8IXF9 295 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 ZCCHC7Q8N3Z6 543 aaKnown RBP16.02■□□□□ 0.16
CLN3-252ENST00000636907 OR2T12Q8NG77 320 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 UTP15Q8TED0 518 aaKnown RBP16.02■□□□□ 0.16
CLN3-252ENST00000636907 IL21RQ9HBE5 538 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 C5AR2Q9P296 337 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 CSNK1G3Q9Y6M4 447 aa16.02■□□□□ 0.16
CLN3-252ENST00000636907 SDK1Q7Z5N4 2213 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 C1orf226A1L170 272 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 CLIC1O00299 241 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 ABCB1P08183 1280 aaPredicted RBP16.02■□□□□ 0.15
CLN3-252ENST00000636907 ZNF888P0CJ79 500 aaPredicted RBP16.02■□□□□ 0.15
CLN3-252ENST00000636907 GIMD1P0DJR0 217 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 CDH3P22223 829 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 GCKP35557 465 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 RXRGP48443 463 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 GZMMP51124 257 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 HBA1P69905 142 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 GAB1Q13480 694 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 GLYATQ6IB77 296 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 IRGCQ6NXR0 463 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 FAM180BQ6P0A1 224 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 LRRC74BQ6ZQY2 392 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 ZNF551Q7Z340 670 aaPredicted RBP16.02■□□□□ 0.15
CLN3-252ENST00000636907 DTWD1Q8N5C7 304 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 DTWD2Q8NBA8 298 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 CAMKVQ8NCB2 501 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 GOT1L1Q8NHS2 421 aaPredicted RBP16.02■□□□□ 0.15
CLN3-252ENST00000636907 UCN3Q969E3 161 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 FAM120BQ96EK7 910 aaKnown RBP16.02■□□□□ 0.15
CLN3-252ENST00000636907 TRAPPC9Q96Q05 1148 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 SUSD2Q9UGT4 822 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 MAGEL2Q9UJ55 1249 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 VPS4AQ9UN37 437 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 ASB4Q9Y574 426 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 RNF215Q9Y6U7 377 aa16.02■□□□□ 0.15
CLN3-252ENST00000636907 A0A1W2PRB8 838 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 EVPLLA8MZ36 301 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 FAM220BPB1ANY3 271 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 ZCCHC18P0CG32 403 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 GGT1P19440 569 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 ARRB1P49407 418 aaPredicted RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 BTN3A2P78410 334 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 ABHD18Q0P651 414 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 NDUFAF5Q5TEU4 345 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 GPR155Q7Z3F1 870 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 PROSER1Q86XN7 944 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 CLEC4FQ8N1N0 589 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 ZCCHC10Q8TBK6 192 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 PIGKQ92643 395 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 RERGQ96A58 199 aaPredicted RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 SLCO4A1Q96BD0 722 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 DUS3LQ96G46 650 aaKnown RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 ZNF764Q96H86 408 aaPredicted RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 TACO1Q9BSH4 297 aaKnown RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 RPF2Q9H7B2 306 aaKnown RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 TPT1P8Q9HAU6 139 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 FAM60AQ9NP50 221 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 ZNF282Q9UDV7 671 aaPredicted RBP16.01■□□□□ 0.15
CLN3-252ENST00000636907 FBXW2Q9UKT8 454 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 PCDHGB4Q9UN71 923 aa16.01■□□□□ 0.15
CLN3-252ENST00000636907 GOLGA4Q13439 2230 aaKnown RBP16■□□□□ 0.15
CLN3-252ENST00000636907 SLC9B1P1A6NJY1 282 aa16■□□□□ 0.15
CLN3-252ENST00000636907 RHPN2P1A8MT19 583 aa16■□□□□ 0.15
CLN3-252ENST00000636907 PRKRAO75569 313 aaKnown RBP16■□□□□ 0.15
CLN3-252ENST00000636907 SCELO95171 688 aa16■□□□□ 0.15
CLN3-252ENST00000636907 EIF2S1P05198 315 aaKnown RBP16■□□□□ 0.15
CLN3-252ENST00000636907 SMIM10L1P0DMW3 83 aa16■□□□□ 0.15
CLN3-252ENST00000636907 DRD2P14416 443 aa16■□□□□ 0.15
CLN3-252ENST00000636907 AASDHQ4L235 1098 aaPredicted RBP16■□□□□ 0.15
CLN3-252ENST00000636907 PHF6Q8IWS0 365 aaKnown RBP eCLIP16■□□□□ 0.15
CLN3-252ENST00000636907 SLC35F3Q8IY50 421 aa16■□□□□ 0.15
CLN3-252ENST00000636907 ARL10Q8N8L6 244 aa16■□□□□ 0.15
CLN3-252ENST00000636907 C19orf47Q8N9M1 422 aaKnown RBP16■□□□□ 0.15
CLN3-252ENST00000636907 TNIP2Q8NFZ5 429 aa16■□□□□ 0.15
CLN3-252ENST00000636907 PNPT1Q8TCS8 783 aaKnown RBP16■□□□□ 0.15
CLN3-252ENST00000636907 ZFP90Q8TF47 636 aa16■□□□□ 0.15
CLN3-252ENST00000636907 EXOSC8Q96B26 276 aaKnown RBP16■□□□□ 0.15
CLN3-252ENST00000636907 SMIM10Q96HG1 83 aa16■□□□□ 0.15
CLN3-252ENST00000636907 MAP3K3Q99759 626 aa16■□□□□ 0.15
CLN3-252ENST00000636907 FAIM2Q9BWQ8 316 aa16■□□□□ 0.15
CLN3-252ENST00000636907 COPS7BQ9H9Q2 264 aaPredicted RBP16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms