RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 GSX2Q9BZM3 304 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 NAT10Q9H0A0 1025 aaKnown RBP13.4□□□□□ -0.26
CLN3-249ENST00000636685 PPIEQ9UNP9 301 aaKnown RBP13.4□□□□□ -0.26
CLN3-249ENST00000636685 TCAF1Q9Y4C2 921 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 ATG4BQ9Y4P1 393 aa13.4□□□□□ -0.26
CLN3-249ENST00000636685 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.4□□□□□ -0.26
CLN3-249ENST00000636685 AHRRA9YTQ3 701 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 NDUFS4O43181 175 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 CEP104O60308 925 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 ZNF354AO60765 605 aaPredicted RBP13.39□□□□□ -0.27
CLN3-249ENST00000636685 GAS8O95995 478 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 P04436 131 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 SERPIND1P05546 499 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 ZNF888P0CJ79 500 aaPredicted RBP13.39□□□□□ -0.27
CLN3-249ENST00000636685 FPR1P21462 350 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 CTSSP25774 331 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 PIGAP37287 484 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 NR1H2P55055 460 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 GDF10P55107 478 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 ADARP55265 1226 aaKnown RBP13.39□□□□□ -0.27
CLN3-249ENST00000636685 TNK1Q13470 666 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 CAPRIN1Q14444 709 aaKnown RBP13.39□□□□□ -0.27
CLN3-249ENST00000636685 RPS6KA1Q15418 735 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 TERF2Q15554 542 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 P3H1Q32P28 736 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 KRTAP24-1Q3LI83 254 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 REXO1L1PQ8IX06 675 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 NEIL3Q8TAT5 605 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 BPIFA3Q9BQP9 254 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 OSBPL8Q9BZF1 889 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 ZNF703Q9H7S9 590 aaPredicted RBP13.39□□□□□ -0.27
CLN3-249ENST00000636685 CCDC177Q9NQR7 707 aaPredicted RBP13.39□□□□□ -0.27
CLN3-249ENST00000636685 GALNT8Q9NY28 637 aa13.39□□□□□ -0.27
CLN3-249ENST00000636685 MED12Q93074 2177 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 A0A087X1B8 175 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 TGFBR3LH3BV60 316 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 PSMD12O00232 456 aaPredicted RBP13.38□□□□□ -0.27
CLN3-249ENST00000636685 RNH1P13489 461 aaKnown RBP13.38□□□□□ -0.27
CLN3-249ENST00000636685 CHRM3P20309 590 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 OPRM1P35372 400 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 CYLC1P35663 651 aaPredicted RBP13.38□□□□□ -0.27
CLN3-249ENST00000636685 HK2P52789 917 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 TBPL1P62380 186 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 TCEAL1Q15170 157 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 RNF187Q5TA31 235 aaPredicted RBP13.38□□□□□ -0.27
CLN3-249ENST00000636685 PPP1R21Q6ZMI0 780 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 CLEC17AQ6ZS10 378 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 LIX1Q8N485 282 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 GOLM1Q8NBJ4 401 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 IQCDQ96DY2 449 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 HSPBAP1Q96EW2 488 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 FAM129AQ9BZQ8 928 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 CHRAC1Q9NRG0 131 aa13.38□□□□□ -0.27
CLN3-249ENST00000636685 MED12LQ86YW9 2145 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 C15orf38-AP3S2A0A0A6YYH1 394 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 CDH1P12830 882 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 GRK3P35626 688 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 SKIV2L2P42285 1042 aaKnown RBP13.37□□□□□ -0.27
CLN3-249ENST00000636685 COPS2P61201 443 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 SKP1P63208 163 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 AADACL2Q6P093 401 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 LUZP2Q86TE4 346 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 C17orf64Q86WR6 236 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 MPP5Q8N3R9 675 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 OTUD6BQ8N6M0 293 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 LPGAT1Q92604 370 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 SGCZQ96LD1 299 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 SLC30A3Q99726 388 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 ACKR4Q9NPB9 350 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 YAE1D1Q9NRH1 226 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.37□□□□□ -0.27
CLN3-249ENST00000636685 TESMINQ9Y4I5 508 aa13.37□□□□□ -0.27
CLN3-249ENST00000636685 DEFB108AA8MXU0 73 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 GOLGA6L22H0YM25 854 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 OR1F1O43749 312 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 AVILO75366 819 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 IL18BPO95998 194 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 HNF4AP41235 474 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 RAB8AP61006 207 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 CRYZQ08257 329 aaKnown RBP13.36□□□□□ -0.27
CLN3-249ENST00000636685 NSUN5P2Q63ZY6 315 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 ADGRD1Q6QNK2 874 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 HSDL2Q6YN16 418 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 C20orf204Q6ZNR8 217 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 CA13Q8N1Q1 262 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 PPHLN1Q8NEY8 458 aaKnown RBP13.36□□□□□ -0.27
CLN3-249ENST00000636685 UTP15Q8TED0 518 aaKnown RBP13.36□□□□□ -0.27
CLN3-249ENST00000636685 ASB11Q8WXH4 323 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 ALKBH8Q96BT7 664 aaKnown RBP13.36□□□□□ -0.27
CLN3-249ENST00000636685 PIK3IP1Q96FE7 263 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 TRIB1Q96RU8 372 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 CHP1Q99653 195 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 TIMP4Q99727 224 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 ZFP64Q9NPA5 681 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 EFR3BQ9Y2G0 817 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 CRYL1Q9Y2S2 319 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 MMACHCQ9Y4U1 282 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 CLDN16Q9Y5I7 305 aa13.36□□□□□ -0.27
CLN3-249ENST00000636685 LRRC3CA6NJW4 275 aa13.35□□□□□ -0.27
CLN3-249ENST00000636685 RNF223E7ERA6 249 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms