RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 NCLNQ969V3 563 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 MS4A6EQ96DS6 147 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 EGFL8Q99944 293 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 TIMMDC1Q9NPL8 285 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 PRTFDC1Q9NRG1 225 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 SNX12Q9UMY4 172 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 YARS2Q9Y2Z4 477 aaKnown RBP23.21■■□□□ 1.31
PTPRF-216ENST00000617451 OARD1Q9Y530 152 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 PSAT1Q9Y617 370 aa23.21■■□□□ 1.31
PTPRF-216ENST00000617451 A0A0G2JN53 185 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 LRIT2A6NDA9 550 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 H2AFYO75367 372 aaKnown RBP23.2■■□□□ 1.3
PTPRF-216ENST00000617451 IGFBP2P18065 325 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 SAT1P21673 171 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 HNRNPH1P31943 449 aaKnown RBP23.2■■□□□ 1.3
PTPRF-216ENST00000617451 SSR4P51571 173 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 HNRNPFP52597 415 aaKnown RBP23.2■■□□□ 1.3
PTPRF-216ENST00000617451 TMEM211Q6ICI0 200 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 ARHGAP11AQ6P4F7 1023 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 TMIGD1Q6UXZ0 262 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 ZC3HC1Q86WB0 502 aaKnown RBP23.2■■□□□ 1.3
PTPRF-216ENST00000617451 KLHDC8AQ8IYD2 350 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 TMEM52Q8NDY8 209 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 OR52N2Q8NGI0 321 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 LRRC39Q96DD0 335 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 KCMF1Q9P0J7 381 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 MED13LQ71F56 2210 aa23.2■■□□□ 1.3
PTPRF-216ENST00000617451 ZNF407Q9C0G0 2248 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 TMEM200CA6NKL6 621 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 CLDN4O14493 209 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 ERI3O43414 337 aaKnown RBP23.19■■□□□ 1.3
PTPRF-216ENST00000617451 PRKNO60260 465 aaPredicted RBP23.19■■□□□ 1.3
PTPRF-216ENST00000617451 ZFAND5O76080 213 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 WDR47O94967 919 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 TUBB4AP04350 444 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 GDF5P43026 501 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 SLC6A12P48065 614 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 RAB38P57729 211 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 TAS2R39P59534 338 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 SLC13A2Q13183 592 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 ZNF460Q14592 562 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 C18orf21Q32NC0 220 aaPredicted RBP23.19■■□□□ 1.3
PTPRF-216ENST00000617451 C16orf47Q6ZP98 133 aaPredicted RBP23.19■■□□□ 1.3
PTPRF-216ENST00000617451 LILRB4Q8NHJ6 448 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 ASB5Q8WWX0 329 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 QRFPRQ96P65 431 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 CCDC77Q9BR77 488 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 TP63Q9H3D4 680 aaPredicted RBP23.19■■□□□ 1.3
PTPRF-216ENST00000617451 DEPPQ9NTK1 212 aa23.19■■□□□ 1.3
PTPRF-216ENST00000617451 FAM95CA0A1B0GW59 222 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 USP27XA6NNY8 438 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 FANCGO15287 622 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 PDE9AO76083 593 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 GSTM2P28161 218 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 CHRNB4P30926 498 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 SLBPQ14493 270 aaKnown RBP eCLIP23.18■■□□□ 1.3
PTPRF-216ENST00000617451 TSNQ15631 228 aaKnown RBP23.18■■□□□ 1.3
PTPRF-216ENST00000617451 SPNS3Q6ZMD2 512 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 ADAMTSL2Q86TH1 951 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 GPALPP1Q8IXQ4 340 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 ZNF595Q8IYB9 648 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 PSD4Q8NDX1 1056 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 ANKRD49Q8WVL7 239 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 RHBDF1Q96CC6 855 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 SEC16BQ96JE7 1060 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 NT5DC2Q9H857 520 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 ADAP2Q9NPF8 381 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 ERVK-11Q9UQG0 969 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 RNF6Q9Y252 685 aa23.18■■□□□ 1.3
PTPRF-216ENST00000617451 INTS1Q8N201 2190 aaKnown RBP23.18■■□□□ 1.3
PTPRF-216ENST00000617451 B3GALT2O43825 422 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 OR2J2O76002 312 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 TBX6O95947 436 aaPredicted RBP23.17■■□□□ 1.3
PTPRF-216ENST00000617451 NR0B1P51843 470 aaKnown RBP23.17■■□□□ 1.3
PTPRF-216ENST00000617451 MGAT5Q09328 741 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 XKR6Q5GH73 641 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 EMC4Q5J8M3 183 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 FRA10AC1Q70Z53 315 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 FAM47BQ8NA70 645 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 CCT6BQ92526 530 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 DEFB127Q9H1M4 99 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 LIN28AQ9H9Z2 209 aaKnown RBP23.17■■□□□ 1.3
PTPRF-216ENST00000617451 NPDC1Q9NQX5 325 aaPredicted RBP23.17■■□□□ 1.3
PTPRF-216ENST00000617451 MYOTQ9UBF9 498 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 CTNNAL1Q9UBT7 734 aa23.17■■□□□ 1.3
PTPRF-216ENST00000617451 MRPS33Q9Y291 106 aaKnown RBP23.17■■□□□ 1.3
PTPRF-216ENST00000617451 DNAJC13O75165 2243 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 A0A088AWK7 358 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 A8MVJ9 347 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 CYR61O00622 381 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 CLEC3AO75596 197 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 ZNF10P21506 573 aaPredicted RBP23.16■■□□□ 1.3
PTPRF-216ENST00000617451 PLA2G16P53816 162 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 TFF3Q07654 80 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 ELAVL1Q15717 326 aaKnown RBP23.16■■□□□ 1.3
PTPRF-216ENST00000617451 ADPRMQ3LIE5 342 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 KRT78Q8N1N4 520 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 TMEM132CQ8N3T6 1108 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 RPRMLQ8N4K4 120 aa23.16■■□□□ 1.3
PTPRF-216ENST00000617451 OR2L5Q8NG80 312 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms