RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 LRP4O75096 1905 aa4.14□□□□□ -1.75
LINC00540-201ENST00000611481 SEC16AO15027 2179 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 GOLGA6L10A0A0M3HER8 536 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 FAM237BA0A1B0GVD1 139 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 NKX2-6A6NCS4 301 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 LIPT2A6NK58 231 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PEX12O00623 359 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 ZSCAN9O15535 394 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 DHHO43323 396 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 RRP9O43818 475 aaKnown RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 KLHL41O60662 606 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 DEXIO95424 95 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 TNNC2P02585 160 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 FGF1P05230 155 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 TNNT1P13805 278 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PDGFRAP16234 1089 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 CDH2P19022 906 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 THBS4P35443 961 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PPARGP37231 505 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 HSD17B7P56937 341 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 RPS13P62277 151 aaKnown RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PSG6Q00889 435 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 SULT2A1Q06520 285 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 GPS1Q13098 491 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PDCLQ13371 301 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 CSHL1Q14406 222 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 IRF4Q15306 451 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PLA1AQ53H76 456 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 ZNF628Q5EBL2 1059 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 RAB41Q5JT25 222 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 ARMC4Q5T2S8 1044 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 MANEALQ5VSG8 457 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 KRT80Q6KB66 452 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 DPY19L3Q6ZPD9 716 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 CLEC20AQ6ZU45 233 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 SLC9B2Q86UD5 537 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 TRABD2AQ86V40 505 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 P3H2Q8IVL5 708 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 FAM71DQ8N9W8 422 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 POGLUT1Q8NBL1 392 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 Q8NFD4 153 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 OR5B17Q8NGF7 314 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 OR10G6Q8NH81 332 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 ROBO4Q8WZ75 1007 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 POMGNT1Q8WZA1 660 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 OR1E3Q8WZA6 343 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 NCSTNQ92542 709 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 MR1Q95460 341 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 VPS33AQ96AX1 596 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 CCDC127Q96BQ5 260 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 SAAL1Q96ER3 474 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PGAP3Q96FM1 320 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PPP1R16AQ96I34 528 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 ANKRD36BP1Q96IX9 119 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 TSGA13Q96PP4 275 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 RAB3IPQ96QF0 476 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 MESP1Q9BRJ9 268 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 FEM1AQ9BSK4 669 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 TIPINQ9BVW5 301 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 SLCO5A1Q9H2Y9 848 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 SUDS3Q9H7L9 328 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 PLEKHA2Q9HB19 425 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 TXLNGQ9NUQ3 528 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 FAM49BQ9NUQ9 324 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 GIMAP4Q9NUV9 329 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 BEX4Q9NWD9 120 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 HPF1Q9NWY4 346 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 RBAKQ9NYW8 714 aaPredicted RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 KCND2Q9NZV8 630 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 LARSQ9P2J5 1176 aaKnown RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 ANAPC5Q9UJX4 755 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 HBS1LQ9Y450 684 aaKnown RBP4.13□□□□□ -1.75
LINC00540-201ENST00000611481 OR1A2Q9Y585 309 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 DYSFO75923 2080 aa4.13□□□□□ -1.75
LINC00540-201ENST00000611481 HCFC1P51610 2035 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 GOLGA8IPA6NC78 632 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 GOLGA8JA6NMD2 632 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TMEM110-MUSTN1A8MSY1 372 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PLOD2O00469 737 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 CES2O00748 559 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SOCS6O14544 535 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 NDC80O14777 642 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TGFB1I1O43294 461 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ACSL4O60488 711 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 VNN1O95497 513 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SLC4A1P02730 911 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TPOP07202 933 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 HOXD4P09016 255 aaPredicted RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 TMIGD3P0DMS9 266 aaPredicted RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 UGT1A4P22310 534 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 GP5P40197 560 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 CAPZA2P47755 286 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 ARCN1P48444 511 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PEX5P50542 639 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SLC12A2P55011 1212 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 CDH15P55291 814 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 SUMO2P61956 95 aaKnown RBP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 YWHAGP61981 247 aaKnown RBP eCLIP4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PRAMEP78395 509 aa4.12□□□□□ -1.75
LINC00540-201ENST00000611481 PDE1BQ01064 536 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms