RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 SULT1C3Q6IMI6 304 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CAPN12Q6ZSI9 719 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 C3orf62Q6ZUJ4 267 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 VN1R5Q7Z5H4 357 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 DOLPP1Q86YN1 238 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 SULF2Q8IWU5 870 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CHERPQ8IWX8 916 aaKnown RBP7.11□□□□□ -1.27
CUX1-219ENST00000606749 GHDCQ8N2G8 530 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 TCAIMQ8N3R3 496 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CPSF7Q8N684 471 aaKnown RBP7.11□□□□□ -1.27
CUX1-219ENST00000606749 TMEM52Q8NDY8 209 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 B3GNT7Q8NFL0 401 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 OR2L5Q8NG80 312 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CCT6BQ92526 530 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 TMEM125Q96AQ2 219 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 PDLIM2Q96JY6 352 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 UBXN10Q96LJ8 280 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 PHF12Q96QT6 1004 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CPNE1Q99829 537 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 ERP44Q9BS26 406 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 TMEM79Q9BSE2 394 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 REXO4Q9GZR2 422 aaKnown RBP7.11□□□□□ -1.27
CUX1-219ENST00000606749 EHD1Q9H4M9 534 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 CAB39LQ9H9S4 337 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 SAYSD1Q9NPB0 183 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 PRDM7Q9NQW5 492 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 PRTFDC1Q9NRG1 225 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 DNAJC11Q9NVH1 559 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 GPRC5BQ9NZH0 403 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 KCMF1Q9P0J7 381 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 WHRNQ9P202 907 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 ZNF223Q9UK11 482 aaPredicted RBP7.11□□□□□ -1.27
CUX1-219ENST00000606749 PTBP2Q9UKA9 531 aaKnown RBP7.11□□□□□ -1.27
CUX1-219ENST00000606749 FBXW2Q9UKT8 454 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 ASB1Q9Y576 335 aa7.11□□□□□ -1.27
CUX1-219ENST00000606749 GTF3C1Q12789 2109 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 CREBBPQ92793 2442 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 CENPEQ02224 2701 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 A0A088AWK7 358 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 TCRBV9S1A1TA0A576 114 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 FAM187AA6NFU0 413 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 TMEM200CA6NKL6 621 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 FAM159BA6NKW6 160 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 KLRC4-KLRK1H3BQV0 150 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ADAM10O14672 748 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 EIF3HO15372 352 aaKnown RBP eCLIP7.1□□□□□ -1.27
CUX1-219ENST00000606749 PHGDHO43175 533 aaKnown RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 B3GALT2O43825 422 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 PEX1O43933 1283 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 PRKNO60260 465 aaPredicted RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 CTNSO60931 367 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ITGA10O75578 1167 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 STK16O75716 305 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 C1QAP02745 245 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 SNRPB2P08579 225 aaKnown RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 ABOP16442 354 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 STMN1P16949 149 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ZNF24P17028 368 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 EPORP19235 508 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 CD22P20273 847 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ZNF10P21506 573 aaPredicted RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 PPP2R1BP30154 601 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 HPDP32754 393 aaPredicted RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 PTGER1P34995 402 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 PTGER4P35408 488 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 HSPA7P48741 367 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 HNRNPFP52597 415 aaKnown RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 MTTPP55157 894 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 LIM2P55344 173 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 GPX6P59796 221 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ATP6V0D1P61421 351 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 HSF1Q00613 529 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 CALCOCO2Q13137 446 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 SLC13A2Q13183 592 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 DOC2AQ14183 400 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 EFTUD2Q15029 972 aaKnown RBP eCLIP7.1□□□□□ -1.27
CUX1-219ENST00000606749 XKR6Q5GH73 641 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ADNP2Q6IQ32 1131 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 TRIM40Q6P9F5 258 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ABHD17CQ6PCB6 329 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 C3P1Q6ZMU1 363 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 NCCRP1Q6ZVX7 275 aaPredicted RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 FGD2Q7Z6J4 655 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 UBE3DQ7Z6J8 389 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 CLNKQ7Z7G1 428 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 ZNF595Q8IYB9 648 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 TMEM156Q8N614 296 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 SNX31Q8N9S9 440 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 FAM47BQ8NA70 645 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 POGLUT1Q8NBL1 392 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 C16orf52Q8NHV5 167 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 AGAP11Q8TF27 550 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 CDKL2Q92772 493 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 NCLNQ969V3 563 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 KIAA1191Q96A73 305 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 WDR34Q96EX3 536 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 PTCD3Q96EY7 689 aaKnown RBP7.1□□□□□ -1.27
CUX1-219ENST00000606749 TSPAN17Q96FV3 270 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 VMP1Q96GC9 406 aa7.1□□□□□ -1.27
CUX1-219ENST00000606749 F2RL3Q96RI0 385 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms