RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 HS6ST1O60243 411 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 SH3BGRLO75368 114 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 ITGA10O75578 1167 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 TRHRP34981 398 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 PTGER4P35408 488 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 PAFAH1B1P43034 410 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 HSPA7P48741 367 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 CDKL1Q00532 357 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 ADNP2Q6IQ32 1131 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 CEP128Q6ZU80 1094 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 MDGA2Q7Z553 956 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 FGD2Q7Z6J4 655 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 CREG2Q8IUH2 290 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 SDCCAG3Q96C92 435 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 MS4A6EQ96DS6 147 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 VMP1Q96GC9 406 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 LURAP1Q96LR2 239 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 RUNDC3BQ96NL0 473 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 DEFB127Q9H1M4 99 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 RHOJQ9H4E5 214 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 COPS7BQ9H9Q2 264 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 KCMF1Q9P0J7 381 aa16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 NCOA6Q14686 2063 aaPredicted RBP16.4■□□□□ 0.22
SHKBP1-223ENST00000600552 LRIT2A6NDA9 550 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 G3V3Y1 287 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 TGFBR3LH3BV60 316 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 CCDC166P0CW27 439 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 TNNI3P19429 210 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 CERS1P27544 350 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 PTGS2P35354 604 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 KIR3DL1P43629 444 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 RPL21P46778 160 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 SSR4P51571 173 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 RAB38P57729 211 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 XKR6Q5GH73 641 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 CD163Q86VB7 1156 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 GPSM1Q86YR5 675 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 APCDD1LQ8NCL9 501 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 TTLQ8NG68 377 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 CA5BP1Q8WTZ4 195 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 PYROXD1Q8WU10 500 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 REXO4Q9GZR2 422 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 DPH5Q9H2P9 285 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 SAYSD1Q9NPB0 183 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 SMYD2Q9NRG4 433 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 DNAJC11Q9NVH1 559 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 MOCS1Q9NZB8 636 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 CD274Q9NZQ7 290 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 TXNDC16Q9P2K2 825 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 MRPS33Q9Y291 106 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 ASB1Q9Y576 335 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 SAR1BQ9Y6B6 198 aa16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 TEP1Q99973 2627 aaKnown RBP16.39■□□□□ 0.21
SHKBP1-223ENST00000600552 A0A088AWK7 358 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 CXorf49A8MYA2 514 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 WWP2O00308 870 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 TAPBPO15533 448 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 PRKNO60260 465 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 ZFAND5O76080 213 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 S100BP04271 92 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF10P21506 573 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 SSTR1P30872 391 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 SLC6A12P48065 614 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 PLGLB1Q02325 96 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 ID2Q02363 134 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 FRG1Q14331 258 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 TGFBIQ15582 683 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 TRIM40Q6P9F5 258 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 IL20RBQ6UXL0 311 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 CHERPQ8IWX8 916 aaKnown RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 SCUBE1Q8IWY4 988 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF295-AS1Q8N0V1 137 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 POGLUT1Q8NBL1 392 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 ANKRD7Q92527 254 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 F2RL3Q96RI0 385 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 CSF3RQ99062 836 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 NAPGQ99747 312 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 NPLQ9BXD5 320 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 TRIM8Q9BZR9 551 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 TIMMDC1Q9NPL8 285 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 NSMCE4AQ9NXX6 385 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF223Q9UK11 482 aaPredicted RBP16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 CLCA3PQ9Y6N3 262 aa16.38■□□□□ 0.21
SHKBP1-223ENST00000600552 FAM166BA8MTA8 275 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 A8MVJ9 347 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 E9PLN8 166 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 CCNT2O60583 730 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 OR2J2O76002 312 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 TFEBP19484 476 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 AGAP20933 346 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 GMPRP36959 345 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 LIM2P55344 173 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 HSD17B7P56937 341 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 POU4F1Q01851 419 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 STX4Q12846 297 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 DOC2AQ14183 400 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 OR4D1Q15615 310 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 VN1R5Q7Z5H4 357 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 OR2L5Q8NG80 312 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 OR52N2Q8NGI0 321 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms