RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 BSGP35613 385 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 NAGLUP54802 743 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 MTTPP55157 894 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 LIM2P55344 173 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 BTG2P78543 158 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 CUL3Q13618 768 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 RBBP7Q16576 425 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 TUBB8Q3ZCM7 444 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 CEP85LQ5SZL2 805 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 FRG2Q64ET8 278 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 FRMD7Q6ZUT3 714 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 ARMC2Q8NEN0 867 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 MYRIPQ8NFW9 859 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 OR6Y1Q8NGX8 325 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 ATP6V1E2Q96A05 226 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 CCDC126Q96EE4 140 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 KCNC2Q96PR1 638 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 FAM111AQ96PZ2 611 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 FRG2BQ96QU4 278 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 SERINC2Q96SA4 455 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 TBCDQ9BTW9 1192 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 ZNF700Q9H0M5 742 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 DAPP1Q9UN19 280 aa18.36■□□□□ 0.53
SHKBP1-221ENST00000599833 CDC123O75794 336 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 NR1D1P20393 614 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 HIST1H1TP22492 207 aaPredicted RBP18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 HTR6P50406 440 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 ARFIP1P53367 373 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 FOXA1P55317 472 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 RAB38P57729 211 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 LCP2Q13094 533 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 MPP2Q14168 576 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 FAAH2Q6GMR7 532 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 QSOX2Q6ZRP7 698 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 ANKRD37Q7Z713 158 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 SCUBE1Q8IWY4 988 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 ACOT4Q8N9L9 421 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 FDCSPQ8NFU4 85 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 REPS1Q96D71 796 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 MTFMTQ96DP5 389 aaKnown RBP18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 PGM2Q96G03 612 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 IMMP1LQ96LU5 166 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 KCNA7Q96RP8 456 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 MAPKAP1Q9BPZ7 522 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 NUDT9Q9BW91 350 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 NECTIN3Q9NQS3 549 aa18.35■□□□□ 0.53
SHKBP1-221ENST00000599833 A0A0A6YYD5 115 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 PCDH17O14917 1159 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 RGS16O15492 202 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 EEDO75530 441 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 HPP00738 406 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 PDYNP01213 254 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 C8orf89P0DMQ9 161 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 RNH1P13489 461 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 ACPPP15309 386 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 PTX3P26022 381 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 ALDH3A1P30838 453 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 ARRB2P32121 409 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 HPDP32754 393 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 TSFMP43897 325 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 CCL11P51671 97 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 SKP1P63208 163 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 EEF1A2Q05639 463 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 MINDY4Q4G0A6 757 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 LIPMQ5VYY2 423 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 CES4AQ5XG92 561 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 MRM1Q6IN84 353 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 GPRIN3Q6ZVF9 776 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 CHSY3Q70JA7 882 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 ZCCHC7Q8N3Z6 543 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 FAR2Q96K12 515 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 FER1L6-AS2Q96M78 137 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 SMC6Q96SB8 1091 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 ARHGAP9Q9BRR9 750 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 MECRQ9BV79 373 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 GATA5Q9BWX5 397 aaPredicted RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 SSU72Q9NP77 194 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 SENP1Q9P0U3 644 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 PCDHGA9Q9Y5G4 932 aaKnown RBP18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 CPAMD8Q8IZJ3 1885 aa18.34■□□□□ 0.53
SHKBP1-221ENST00000599833 ZNF462Q96JM2 2506 aa18.33■□□□□ 0.53
SHKBP1-221ENST00000599833 IGHV3-20A0A0C4DH32 117 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 MANBAO00462 879 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 PEX12O00623 359 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 B3GALT2O43825 422 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 TMPRSS11DO60235 418 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 ERLIN1O75477 346 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 ESRRBO95718 433 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 MLYCDO95822 493 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 CELA2AP08217 269 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 RRADP55042 308 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 PKNOX1P55347 436 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 TBL3Q12788 808 aaKnown RBP18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 C10orf62Q5T681 223 aaPredicted RBP18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 OR4C11Q6IEV9 310 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 NDUFAF7Q7L592 441 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 GALNT16Q8N428 558 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 ZNF843Q8N446 348 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 CDYL2Q8N8U2 506 aa18.33■□□□□ 0.52
SHKBP1-221ENST00000599833 SRFBP1Q8NEF9 429 aaKnown RBP18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms