RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 FAM83EQ2M2I3 478 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 UBAP2Q5T6F2 1119 aaKnown RBP14.11□□□□□ -0.15
LIG1-215ENST00000597901 HIST2H2BCQ6DN03 193 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 TRIM40Q6P9F5 258 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 CEP128Q6ZU80 1094 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 CCDC91Q7Z6B0 441 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 UBE3DQ7Z6J8 389 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 CENPLQ8N0S6 344 aaPredicted RBP14.11□□□□□ -0.15
LIG1-215ENST00000597901 LGI4Q8N135 537 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 NOA1Q8NC60 698 aaKnown RBP14.11□□□□□ -0.15
LIG1-215ENST00000597901 MDS2Q8NDY4 140 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 RHEBL1Q8TAI7 183 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 IFT81Q8WYA0 676 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 PRTFDC1Q9NRG1 225 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 SNX15Q9NRS6 342 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 OPTCQ9UBM4 332 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 MTRF1LQ9UGC7 380 aaKnown RBP14.11□□□□□ -0.15
LIG1-215ENST00000597901 PCDHGB6Q9Y5F9 930 aa14.11□□□□□ -0.15
LIG1-215ENST00000597901 CNTRLQ7Z7A1 2325 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 LRRK2Q5S007 2527 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 USP9XQ93008 2570 aaPredicted RBP14.1□□□□□ -0.15
LIG1-215ENST00000597901 A0A096LPK6 155 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 CCDC189A1A4V9 331 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 A1L4Q6 167 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 SAGE2PA6NJ88 616 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 GABRR3A8MPY1 467 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 CYR61O00622 381 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 CDK2AP1O14519 115 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 KLHL2O95198 593 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 CD46P15529 392 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 TYK2P29597 1187 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 MSH2P43246 934 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 HNRNPFP52597 415 aaKnown RBP14.1□□□□□ -0.15
LIG1-215ENST00000597901 LIM2P55344 173 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 OC90Q02509 493 aaPredicted RBP14.1□□□□□ -0.15
LIG1-215ENST00000597901 TGM3Q08188 693 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 ACAP2Q15057 778 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 MED27Q6P2C8 311 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 SCUBE1Q8IWY4 988 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 ZNF595Q8IYB9 648 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 LAS2Q8IYD9 372 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 TEX9Q8N6V9 391 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 TMEM52Q8NDY8 209 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 SRFBP1Q8NEF9 429 aaKnown RBP14.1□□□□□ -0.15
LIG1-215ENST00000597901 MNS1Q8NEH6 495 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 ZNF473Q8WTR7 871 aaKnown RBP14.1□□□□□ -0.15
LIG1-215ENST00000597901 UBTD2Q8WUN7 234 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 UBE2E3Q969T4 207 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 GPR78Q96P69 363 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 FUT8Q9BYC5 575 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 DEFB126Q9BYW3 111 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 TSPYL1Q9H0U9 437 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 ACSS3Q9H6R3 686 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 KLHL1Q9NR64 748 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 PNO1Q9NRX1 252 aaKnown RBP14.1□□□□□ -0.15
LIG1-215ENST00000597901 KCMF1Q9P0J7 381 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 DAPP1Q9UN19 280 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 CLDN16Q9Y5I7 305 aa14.1□□□□□ -0.15
LIG1-215ENST00000597901 SYCE1LA8MT33 242 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 TGFBR3LH3BV60 316 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 CTNSO60931 367 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 WISP2O76076 250 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 TGFB1P01137 390 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 SP1P08047 785 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 STSP08842 583 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 EPB42P16452 691 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 CERS1P27544 350 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 KCNK10P57789 538 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 MLF1P58340 268 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 SLC13A2Q13183 592 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 GLE1Q53GS7 698 aaKnown RBP14.09□□□□□ -0.15
LIG1-215ENST00000597901 ZNF468Q5VIY5 522 aaPredicted RBP14.09□□□□□ -0.15
LIG1-215ENST00000597901 SLC25A25Q6KCM7 469 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 GFRALQ6UXV0 394 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 CHSY3Q70JA7 882 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 HORMAD2Q8N7B1 307 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 B3GNT7Q8NFL0 401 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 OR7G3Q8NG95 312 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 ADAMTS18Q8TE60 1221 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 SCMH1Q96GD3 660 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 KCNC2Q96PR1 638 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 TBCDQ9BTW9 1192 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 MS4A8Q9BY19 250 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 HES7Q9BYE0 225 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 LRFN1Q9P244 771 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 MRPS33Q9Y291 106 aaKnown RBP14.09□□□□□ -0.15
LIG1-215ENST00000597901 ANGPTL3Q9Y5C1 460 aa14.09□□□□□ -0.15
LIG1-215ENST00000597901 PRRC2CQ9Y520 2896 aaKnown RBP14.08□□□□□ -0.15
LIG1-215ENST00000597901 USP9YO00507 2555 aaPredicted RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 RTCAO00442 366 aaKnown RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 KLK8O60259 260 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 SH3BGRLO75368 114 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 NEURL1O76050 574 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 MYO1DO94832 1006 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 UNC5CO95185 931 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 CLDN1O95832 211 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 ALDOAP04075 364 aaKnown RBP14.08□□□□□ -0.16
LIG1-215ENST00000597901 TUBB4AP04350 444 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 CTAGE8P0CG41 777 aa14.08□□□□□ -0.16
LIG1-215ENST00000597901 PCNAP12004 261 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms