RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 PIWIL4Q7Z3Z4 852 aaKnown RBP9.39□□□□□ -0.91
TRIM28-210ENST00000597618 PEX26Q7Z412 305 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 KIF18BQ86Y91 864 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 FBXW8Q8N3Y1 598 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 GOLM1Q8NBJ4 401 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 RELL2Q8NC24 303 aaPredicted RBP9.39□□□□□ -0.91
TRIM28-210ENST00000597618 SIMC1Q8NDZ2 872 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 ABHD11Q8NFV4 315 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 NT5CQ8TCD5 201 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 PDLIM2Q96JY6 352 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 RASL10BQ96S79 203 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 HAUS8Q9BT25 410 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 AARSD1Q9BTE6 412 aaKnown RBP9.39□□□□□ -0.91
TRIM28-210ENST00000597618 CNPPD1Q9BV87 410 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 SGPP1Q9BX95 441 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 CCDC68Q9H2F9 335 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 RHBGQ9H310 441 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 EXO5Q9H790 373 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 ZFATQ9P243 1243 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 MYOTQ9UBF9 498 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 AMFRQ9UKV5 643 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF148Q9UQR1 794 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 PCDHGB3Q9Y5G1 929 aa9.39□□□□□ -0.91
TRIM28-210ENST00000597618 RTTNQ86VV8 2226 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 TRGV5A0A0B4J1U4 118 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 GRID2IPA4D2P6 1211 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SYNDIG1LA6NDD5 238 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 CLCA1A8K7I4 914 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 EIF3FO00303 357 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 PRKNO60260 465 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 IPO7O95373 1038 aaKnown RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 CELA3AP09093 270 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 ETS1P14921 441 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 PAMP19021 973 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 MGAT1P26572 445 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SOX3P41225 446 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 GPR143P51810 404 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SORDQ00796 357 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 FOXO1Q12778 655 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 NAE1Q13564 534 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 PHKG1Q16816 387 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 XKR6Q5GH73 641 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 Q5PR19 223 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF470Q6ECI4 717 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 LRRC8EQ6NSJ5 796 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 NEPROQ6NW34 567 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 AGTRAPQ6RW13 159 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 CES3Q6UWW8 571 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 CYHR1Q6ZMK1 362 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 C16orf47Q6ZP98 133 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 FAM47EQ6ZV65 393 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 MAATS1Q7Z4T9 603 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SCUBE1Q8IWY4 988 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 ULK2Q8IYT8 1036 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 OR4K1Q8NGD4 311 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 CD200R1Q8TD46 325 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 UTP15Q8TED0 518 aaKnown RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 ALKBH8Q96BT7 664 aaKnown RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SGCZQ96LD1 299 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 YIPF4Q9BSR8 244 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 PNO1Q9NRX1 252 aaKnown RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SACM1LQ9NTJ5 587 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SYBUQ9NX95 663 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SPRR3Q9UBC9 169 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF629Q9UEG4 869 aaPredicted RBP9.38□□□□□ -0.91
TRIM28-210ENST00000597618 ZFP69BQ9UJL9 534 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 SOX13Q9UN79 622 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 MED16Q9Y2X0 877 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 DHRS7Q9Y394 339 aa9.38□□□□□ -0.91
TRIM28-210ENST00000597618 CTAGE9A4FU28 777 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 H7C1Q1 480 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 WWP2O00308 870 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 P04436 131 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 C8GP07360 202 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 NPPBP16860 134 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 ENDOUP21128 410 aaKnown RBP9.37□□□□□ -0.91
TRIM28-210ENST00000597618 AHRP35869 848 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 RAB8AP61006 207 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 BASP1P80723 227 aaKnown RBP9.37□□□□□ -0.91
TRIM28-210ENST00000597618 TBX2Q13207 712 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-210ENST00000597618 SP140Q13342 867 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 ZNF750Q32MQ0 723 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 ARMC3Q5W041 872 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 HSDL2Q6YN16 418 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 MBOAT1Q6ZNC8 495 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 SEM1Q6ZVN7 128 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 PRUNE1Q86TP1 453 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 CXorf67Q86X51 503 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-210ENST00000597618 P3H2Q8IVL5 708 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 PALM2Q8IXS6 379 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 CPNE9Q8IYJ1 553 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 SYCE1Q8N0S2 351 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 LRRC75A-AS1Q8N1F1 130 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 CA13Q8N1Q1 262 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 GPATCH11Q8N954 259 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 NAXEQ8NCW5 288 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 SCYL1Q96KG9 808 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 GPR21Q99679 349 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 TSGA10Q9BZW7 698 aa9.37□□□□□ -0.91
TRIM28-210ENST00000597618 LIN28AQ9H9Z2 209 aaKnown RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms