RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 SH2D4BQ5SQS7 431 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 MLIPQ5VWP3 458 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 GALNT18Q6P9A2 607 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 RIPOR1Q6ZS17 1223 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 CHSY3Q70JA7 882 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 ABHD13Q7L211 337 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 RAB3IL1Q8TBN0 382 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 SNRNP27Q8WVK2 155 aaKnown RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 CCT6BQ92526 530 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 RGMAQ96B86 450 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 REPS1Q96D71 796 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 SLC45A3Q96JT2 553 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 FCRL1Q96LA6 429 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 SERPINI1Q99574 410 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 PAIP2Q9BPZ3 127 aaKnown RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 MAPKAP1Q9BPZ7 522 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 GPR87Q9BY21 358 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 FAM117AQ9C073 453 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 ACTL8Q9H568 366 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 ELOVL6Q9H5J4 265 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 WDR54Q9H977 334 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 CLK4Q9HAZ1 481 aaKnown RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 ANKHQ9HCJ1 492 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 SLCO1B3Q9NPD5 702 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 NKIRAS1Q9NYS0 192 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 HCN3Q9P1Z3 774 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 IFT80Q9P2H3 777 aaPredicted RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 GIMAP2Q9UG22 337 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 TCFL5Q9UL49 500 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 DAPP1Q9UN19 280 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 CDC14AQ9UNH5 594 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 EXO1Q9UQ84 846 aaKnown RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 RAP2CQ9Y3L5 183 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 TPRP12270 2363 aaKnown RBP9.98□□□□□ -0.81
LIG1-210ENST00000596332 SCN3AQ9NY46 2000 aa9.98□□□□□ -0.81
LIG1-210ENST00000596332 MAP1BP46821 2468 aaKnown RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 MGAQ8IWI9 3026 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 A0A1W2PR48 441 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 PIP5K1BO14986 540 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 LSM1O15116 133 aaKnown RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 PROM1O43490 865 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 CREG1O75629 220 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 KRT6AP02538 564 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 KRT6BP04259 564 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 LINC00032P0C843 101 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 PRR35P0CG20 571 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 HSD3B1P14060 373 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 FBLP22087 321 aaKnown RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 HSD3B2P26439 372 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 HMOX2P30519 316 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 TSFMP43897 325 aaKnown RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 KRT6CP48668 564 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 MTTPP55157 894 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 HNRNPH2P55795 449 aaKnown RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 BTG2P78543 158 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 RHAGQ02094 409 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 BTKQ06187 659 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 KLC1Q07866 573 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 ATP1A1-AS1Q5TC04 95 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 TTC19Q6DKK2 380 aaPredicted RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 RGS9BPQ6ZS82 235 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 SHISA6Q6ZSJ9 500 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 COMMD6Q7Z4G1 85 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 MMP21Q8N119 569 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 ZCCHC7Q8N3Z6 543 aaKnown RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 IL22RA1Q8N6P7 574 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 GBP7Q8N8V2 638 aaPredicted RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 OR2Y1Q8NGV0 311 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 AGR3Q8TD06 166 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 TWIST2Q8WVJ9 160 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 COL26A1Q96A83 441 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 TM4SF18Q96CE8 201 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 PEX11GQ96HA9 241 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 KCNC2Q96PR1 638 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 CCNL2Q96S94 520 aaPredicted RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 SERINC2Q96SA4 455 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 CSF3RQ99062 836 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 NPLQ9BXD5 320 aaPredicted RBP9.97□□□□□ -0.81
LIG1-210ENST00000596332 MED4Q9NPJ6 270 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 THAP1Q9NVV9 213 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 TRPC4Q9UBN4 977 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 VPS29Q9UBQ0 182 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 SLC12A4Q9UP95 1085 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 ATG4BQ9Y4P1 393 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 CCDC88CQ9P219 2028 aa9.97□□□□□ -0.81
LIG1-210ENST00000596332 IGKV3D-11A0A0A0MRZ8 115 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 A0A1W2PQ72 361 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 URADA6NGE7 173 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 MASP2O00187 686 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 SOCS6O14544 535 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 HSPA4LO95757 839 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 AGXTP21549 392 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 SOX18P35713 384 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 ARL1P40616 181 aaPredicted RBP9.96□□□□□ -0.82
LIG1-210ENST00000596332 XCR1P46094 333 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 AVPR1BP47901 424 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 RPL14P50914 215 aaKnown RBP9.96□□□□□ -0.82
LIG1-210ENST00000596332 HK2P52789 917 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 SLAMF1Q13291 335 aa9.96□□□□□ -0.82
LIG1-210ENST00000596332 RFTN2Q52LD8 501 aaPredicted RBP9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms