RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 SLC29A3Q9BZD2 475 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF358Q9NW07 568 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 MAP10Q9P2G4 905 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 XPR1Q9UBH6 696 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 VPS4AQ9UN37 437 aa14.19□□□□□ -0.14
TRIM28-205ENST00000595028 SVILO95425 2214 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 RIPK2O43353 540 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 B3GALT2O43825 422 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 PRMT3O60678 531 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 RBP1P09455 135 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 MAOAP21397 527 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 SERPINB1P30740 379 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 MTTPP55157 894 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 RAB38P57729 211 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 OR4D2P58180 307 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 TGM3Q08188 693 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 PCBP2Q15366 365 aaKnown RBP eCLIP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 TSNAXIP1Q2TAA8 658 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 FHL5Q5TD97 284 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 GSPT2Q8IYD1 628 aaKnown RBP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 CISD2Q8N5K1 135 aaKnown RBP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 PTGR2Q8N8N7 351 aaPredicted RBP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF473Q8WTR7 871 aaKnown RBP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 SSC4DQ8WTU2 575 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 C19orf60Q96EN9 201 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 SERINC2Q96SA4 455 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 TXLNGYQ9BZA5 131 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 RNF32Q9H0A6 362 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 L2HGDHQ9H9P8 463 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 COPS7BQ9H9Q2 264 aaPredicted RBP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 MMP25Q9NPA2 562 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 PRDM9Q9NQV7 894 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 ASF1BQ9NVP2 202 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 MMACHCQ9Y4U1 282 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 ANGPTL3Q9Y5C1 460 aa14.18□□□□□ -0.14
TRIM28-205ENST00000595028 TNPO3Q9Y5L0 923 aaKnown RBP14.18□□□□□ -0.14
TRIM28-205ENST00000595028 TCRBV16S1A1N1A0A5B0 115 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 A1L4Q6 167 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 DYTNA2CJ06 578 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 LRRC14BA6NHZ5 514 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 FAM227AF5H4B4 570 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 SIX3O95343 332 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-205ENST00000595028 SNRPAP09012 282 aaKnown RBP14.17□□□□□ -0.14
TRIM28-205ENST00000595028 FAM153BP0C7A2 387 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 RNF224P0DH78 156 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 PCNAP12004 261 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 COL6A2P12110 1019 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 GNLYP22749 145 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 GCAP28676 217 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 PIK3CGP48736 1102 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 SLC26A5P58743 744 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 BTG2P78543 158 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 ACTN3Q08043 901 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-205ENST00000595028 GTF2H2Q13888 395 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 RUNX2Q13950 521 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 FAM153CQ494X1 144 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 ABHD17BQ5VST6 288 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 GTF2H2CQ6P1K8 395 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 METTL2BQ6P1Q9 378 aaKnown RBP14.17□□□□□ -0.14
TRIM28-205ENST00000595028 GOLGA7Q7Z5G4 137 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 MYLK4Q86YV6 388 aaPredicted RBP14.17□□□□□ -0.14
TRIM28-205ENST00000595028 SCUBE1Q8IWY4 988 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 OR7G3Q8NG95 312 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 M1APQ8TC57 530 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 KCNC2Q96PR1 638 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 F2RL3Q96RI0 385 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 PLA2G3Q9NZ20 509 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 TEKT2Q9UIF3 430 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 TMCO1Q9UM00 188 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 NTNG1Q9Y2I2 539 aa14.17□□□□□ -0.14
TRIM28-205ENST00000595028 POLEQ07864 2286 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 SETD2Q9BYW2 2564 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-205ENST00000595028 SAGE2PA6NJ88 616 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 TCP11X1B4DZS4 312 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 STX16-NPEPL1H3BU86 382 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 E2F3O00716 465 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 STX16O14662 325 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 UGDHO60701 494 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 WDPCPO95876 746 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 TNFSF10P50591 281 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 LIM2P55344 173 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF33BQ06732 778 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 TMEM35AQ53FP2 167 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 LIPJQ5W064 366 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 ZNF793Q6ZN11 406 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 FAM47BQ8NA70 645 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 CATSPER1Q8NEC5 780 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 SRFBP1Q8NEF9 429 aaKnown RBP14.16□□□□□ -0.14
TRIM28-205ENST00000595028 ARMC2Q8NEN0 867 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 HAS2Q92819 552 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 SCYL1Q96KG9 808 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 MAGEB10Q96LZ2 347 aaPredicted RBP14.16□□□□□ -0.14
TRIM28-205ENST00000595028 CSF3RQ99062 836 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 BARD1Q99728 777 aaKnown RBP14.16□□□□□ -0.14
TRIM28-205ENST00000595028 TBCDQ9BTW9 1192 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 ROGDIQ9GZN7 287 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 EPB41L4BQ9H329 900 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 ACTR8Q9H981 624 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 KCNK13Q9HB14 408 aa14.16□□□□□ -0.14
TRIM28-205ENST00000595028 PRM3Q9NNZ6 103 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms