RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 MED27Q6P2C8 311 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 ABHD17CQ6PCB6 329 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 CRLF3Q8IUI8 442 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 BEST3Q8N1M1 668 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 TEX9Q8N6V9 391 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 SRFBP1Q8NEF9 429 aaKnown RBP14.32□□□□□ -0.12
TRIM28-203ENST00000593582 KCNC2Q96PR1 638 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 F2RL3Q96RI0 385 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 SERINC2Q96SA4 455 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 PAFAH2Q99487 392 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 OLAHQ9NV23 265 aa14.32□□□□□ -0.12
TRIM28-203ENST00000593582 USP9XQ93008 2570 aaPredicted RBP14.32□□□□□ -0.12
TRIM28-203ENST00000593582 BLACEA4D250 179 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 SAGE2PA6NJ88 616 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 PRAMEF2O60811 474 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 KRT38O76015 456 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 EDN3P14138 238 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 CNTFP26441 200 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 SERPINB1P30740 379 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 HSD17B7P56937 341 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 RAB38P57729 211 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 PCDH1Q08174 1060 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 SLC13A2Q13183 592 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 ESPL1Q14674 2120 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 NAA30Q147X3 362 aaPredicted RBP14.31□□□□□ -0.12
TRIM28-203ENST00000593582 SETDB1Q15047 1291 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 TMEM35AQ53FP2 167 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 CHSY3Q70JA7 882 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 ZNF595Q8IYB9 648 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 LAS2Q8IYD9 372 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 ELP5Q8TE02 316 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 ZNF473Q8WTR7 871 aaKnown RBP14.31□□□□□ -0.12
TRIM28-203ENST00000593582 SSC4DQ8WTU2 575 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 QRFPRQ96P65 431 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 GPR78Q96P69 363 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 PSMG3-AS1Q96PY0 264 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 UTP23Q9BRU9 249 aaKnown RBP14.31□□□□□ -0.12
TRIM28-203ENST00000593582 ROGDIQ9GZN7 287 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 NECTIN3Q9NQS3 549 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 PRTFDC1Q9NRG1 225 aa14.31□□□□□ -0.12
TRIM28-203ENST00000593582 TNPO3Q9Y5L0 923 aaKnown RBP14.31□□□□□ -0.12
TRIM28-203ENST00000593582 DOPEY2Q9Y3R5 2298 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 A0A087WUV0 522 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-203ENST00000593582 POC1B-GALNT4F8VUJ3 575 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 KLK8O60259 260 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 RASAL1O95294 804 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 CERS1P27544 350 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 PIK3CGP48736 1102 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 LIM2P55344 173 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 TUBA3CQ13748 450 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 TERF2Q15554 542 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 GRHL2Q6ISB3 625 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 METTL2BQ6P1Q9 378 aaKnown RBP14.3□□□□□ -0.12
TRIM28-203ENST00000593582 TUBA3EQ6PEY2 450 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 MYLK4Q86YV6 388 aaPredicted RBP14.3□□□□□ -0.12
TRIM28-203ENST00000593582 SCUBE1Q8IWY4 988 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 IFT20Q8IY31 132 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 LGI4Q8N135 537 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 KIF2BQ8N4N8 673 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 FAM47BQ8NA70 645 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 OR7G3Q8NG95 312 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 ISL2Q96A47 359 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 CMTM7Q96FZ5 175 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 TAAR6Q96RI8 345 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 SLX1AQ9BQ83 275 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 CENPKQ9BS16 269 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 TBCDQ9BTW9 1192 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 MS4A8Q9BY19 250 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 ACTR8Q9H981 624 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 PRDM7Q9NQW5 492 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 CPSF2Q9P2I0 782 aaKnown RBP14.3□□□□□ -0.12
TRIM28-203ENST00000593582 ADGRE2Q9UHX3 823 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 ZNF180Q9UJW8 692 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 NFU1Q9UMS0 254 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 DAPP1Q9UN19 280 aa14.3□□□□□ -0.12
TRIM28-203ENST00000593582 SYNDIG1LA6NDD5 238 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 A8MUA0 341 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 E2F3O00716 465 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 CDK2AP1O14519 115 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 MYO1DO94832 1006 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 TGFB1P01137 390 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 CRYABP02511 175 aaKnown RBP14.29□□□□□ -0.12
TRIM28-203ENST00000593582 RBP1P09455 135 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 MAGEA12P43365 314 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 OC90Q02509 493 aaPredicted RBP14.29□□□□□ -0.12
TRIM28-203ENST00000593582 PCBP2Q15366 365 aaKnown RBP eCLIP14.29□□□□□ -0.122e-8■■■■■ 27.9
TRIM28-203ENST00000593582 AP5B1Q2VPB7 878 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 ZNF766Q5HY98 468 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 LIPJQ5W064 366 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 RPS19BP1Q86WX3 136 aaKnown RBP14.29□□□□□ -0.12
TRIM28-203ENST00000593582 PLD6Q8N2A8 252 aaKnown RBP14.29□□□□□ -0.12
TRIM28-203ENST00000593582 HORMAD2Q8N7B1 307 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 B3GNT7Q8NFL0 401 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 DNAJB8Q8NHS0 232 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 UHMK1Q8TAS1 419 aaKnown RBP14.29□□□□□ -0.12
TRIM28-203ENST00000593582 REPS1Q96D71 796 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 NPAS2Q99743 824 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 CDCP1Q9H5V8 836 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 LYRM4Q9HD34 91 aa14.29□□□□□ -0.12
TRIM28-203ENST00000593582 PNO1Q9NRX1 252 aaKnown RBP14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms