RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 RSPH10BP0C881 870 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 HNRNPCL4P0DMR1 293 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ENO3P13929 434 aaPredicted RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 BTDP43251 543 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 OR3A1P47881 315 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 MXI1P50539 228 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 GCKRQ14397 625 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 PRKD1Q15139 912 aaPredicted RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 CFAP157Q5JU67 520 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 TCERG1LQ5VWI1 586 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 CEP85Q6P2H3 762 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ATG9AQ7Z3C6 839 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ANKRD46Q86W74 232 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 MEX3DQ86XN8 651 aaKnown RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 LCORLQ8N3X6 602 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 PCDH20Q8N6Y1 951 aaKnown RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 MIGA1Q8NAN2 632 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 OR5M8Q8NGP6 311 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 OR4A16Q8NH70 328 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 PROX1Q92786 737 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 WBP2Q969T9 261 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 SLCO4A1Q96BD0 722 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 REPS1Q96D71 796 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 RITA1Q96K30 269 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 LMF2Q9BU23 707 aaKnown RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 KRTAP9-2Q9BYQ4 174 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 UBQLN3Q9H347 655 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 NCOR1P1Q9H4R4 102 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 SLA2Q9H6Q3 261 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 CATSPERBQ9H7T0 1116 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ACTR8Q9H981 624 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ROPN1Q9HAT0 212 aaPredicted RBP5.42□□□□□ -1.54
VPS53-219ENST00000576019 CNGB3Q9NQW8 809 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 PIGVQ9NUD9 493 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 RAI14Q9P0K7 980 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ATP6V1HQ9UI12 483 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 PADI3Q9ULW8 664 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP5.42□□□□□ -1.542e-6■■■□□ 15.1
VPS53-219ENST00000576019 SLC4A4Q9Y6R1 1079 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 ZMYM6O95789 1325 aa5.42□□□□□ -1.54
VPS53-219ENST00000576019 A0A087X0K7 114 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 FAM230AA0A1W2PPH8 454 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 FAM90A26D6RGX4 464 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 PRSS46E5RG02 174 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 E9PAM4 449 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 NPIPB6E9PJ23 425 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 POC1B-GALNT4F8VUJ3 575 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 STMND1H3BQB6 276 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 ANKRD28O15084 1053 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 CHADO15335 359 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 TLX2O43763 284 aaPredicted RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 IDH1O75874 414 aaKnown RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 RNF8O76064 485 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 CCDC159P0C7I6 412 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 STAG3L1P0CL83 205 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 CALCBP10092 127 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 EPCAMP16422 314 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 ZNF18P17022 549 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 BDKRB2P30411 391 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 AVPR1AP37288 418 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 DCTP40126 519 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 TAS2R38P59533 333 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 VEZF1Q14119 521 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 ACKR1Q16570 336 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 FAM153CQ494X1 144 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 LRRC23Q53EV4 343 aaPredicted RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 FRG2Q64ET8 278 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 PM20D1Q6GTS8 502 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 TMEM26Q6ZUK4 368 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 RTN4RL2Q86UN3 420 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 ZNF679Q8IYX0 411 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 OR2AK2Q8NG84 335 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 OR52B4Q8NGK2 314 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 SLC20A1Q8WUM9 679 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 SSMEM1Q8WWF3 244 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 METTL21AQ8WXB1 218 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 ZNF75CPQ92670 426 aaPredicted RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 RND1Q92730 232 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 RASL10BQ96S79 203 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 EFHD1Q9BUP0 239 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 POLR1EQ9GZS1 481 aaKnown RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 FOXP1Q9H334 677 aaPredicted RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 TMEM231Q9H6L2 316 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 RBM28Q9NW13 759 aaKnown RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 DONSONQ9NYP3 566 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 RCC2Q9P258 522 aaKnown RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 TXNDC16Q9P2K2 825 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 NOCTQ9UK39 431 aaKnown RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 TLK1Q9UKI8 766 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 PCDHA12Q9UN75 941 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 CAB39Q9Y376 341 aaPredicted RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 MFHAS1Q9Y4C4 1052 aa5.41□□□□□ -1.54
VPS53-219ENST00000576019 FLNAP21333 2647 aaKnown RBP5.41□□□□□ -1.54
VPS53-219ENST00000576019 NUP205Q92621 2012 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 A0A0U1RRA0 63 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 ZSCAN5BA6NJL1 495 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 SLC28A1O00337 649 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 PES1O00541 588 aaKnown RBP5.4□□□□□ -1.54
VPS53-219ENST00000576019 SLC22A2O15244 555 aa5.4□□□□□ -1.54
VPS53-219ENST00000576019 NUDT21O43809 227 aaKnown RBP5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms