RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PM20D2Q8IYS1 436 aa16.63■□□□□ 0.25
CLK3-227ENST00000570296 MPP5Q8N3R9 675 aa16.63■□□□□ 0.25
CLK3-227ENST00000570296 PPHLN1Q8NEY8 458 aaKnown RBP16.63■□□□□ 0.25
CLK3-227ENST00000570296 MBD3L2Q8NHZ7 208 aaPredicted RBP16.63■□□□□ 0.25
CLK3-227ENST00000570296 PEX13Q92968 403 aa16.63■□□□□ 0.25
CLK3-227ENST00000570296 SLC6A15Q9H2J7 730 aa16.63■□□□□ 0.25
CLK3-227ENST00000570296 LIN28AQ9H9Z2 209 aaKnown RBP16.63■□□□□ 0.25
CLK3-227ENST00000570296 ZNF701Q9NV72 531 aaPredicted RBP16.63■□□□□ 0.25
CLK3-227ENST00000570296 C6orf203Q9P0P8 240 aaPredicted RBP16.63■□□□□ 0.25
CLK3-227ENST00000570296 MARCH4Q9P2E8 410 aaPredicted RBP16.63■□□□□ 0.25
CLK3-227ENST00000570296 CAPN11Q9UMQ6 739 aa16.63■□□□□ 0.25
CLK3-227ENST00000570296 MMACHCQ9Y4U1 282 aa16.63■□□□□ 0.25
CLK3-227ENST00000570296 A0A087X1B8 175 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 DEFB108AA8MXU0 73 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 PSMD12O00232 456 aaPredicted RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 WWP2O00308 870 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 SIAH2O43255 324 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 CTIFO43310 598 aaKnown RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 LCMT2O60294 686 aaKnown RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 TMCC2O75069 709 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 AVILO75366 819 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 METTL18O95568 372 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 CCL3P10147 92 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 RNH1P13489 461 aaKnown RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 CHRM3P20309 590 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 GRK3P35626 688 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 CPA2P48052 419 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 EIF3BP55884 814 aaKnown RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 CDH17Q12864 832 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 P3H1Q32P28 736 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 WIPI1Q5MNZ9 446 aaPredicted RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 LRRC25Q8N386 305 aaPredicted RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 MFSD9Q8NBP5 474 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 IGFBPL1Q8WX77 278 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 IQCDQ96DY2 449 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 PDLIM2Q96JY6 352 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 ZNF778Q96MU6 729 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 ZFP64Q9NPA5 681 aa16.62■□□□□ 0.25
CLK3-227ENST00000570296 BOKQ9UMX3 212 aaPredicted RBP16.62■□□□□ 0.25
CLK3-227ENST00000570296 NINQ8N4C6 2090 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 C15orf38-AP3S2A0A0A6YYH1 394 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 RNF223E7ERA6 249 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 CD3EAPO15446 510 aaKnown RBP16.61■□□□□ 0.25
CLK3-227ENST00000570296 NDUFS3O75489 264 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 RFPL3SP0C7P2 107 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 ADRA1DP25100 572 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 CRYZQ08257 329 aaKnown RBP16.61■□□□□ 0.25
CLK3-227ENST00000570296 KLHL38Q2WGJ6 581 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 BBS9Q3SYG4 887 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 CTSL3PQ5NE16 218 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 RNF187Q5TA31 235 aaPredicted RBP16.61■□□□□ 0.25
CLK3-227ENST00000570296 OPN5Q6U736 354 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 HSDL2Q6YN16 418 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 MAPK1IP1LQ8NDC0 245 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 OR52K1Q8NGK4 314 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 PRDM14Q9GZV8 571 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 PCBD2Q9H0N5 130 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 RBSNQ9H1K0 784 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 CCDC177Q9NQR7 707 aaPredicted RBP16.61■□□□□ 0.25
CLK3-227ENST00000570296 PNO1Q9NRX1 252 aaKnown RBP16.61■□□□□ 0.25
CLK3-227ENST00000570296 MGAM2Q2M2H8 2515 aa16.61■□□□□ 0.25
CLK3-227ENST00000570296 H3BMM5 538 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 NDUFS4O43181 175 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 CEP104O60308 925 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 MC3RP41968 323 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 HK2P52789 917 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 PWP1Q13610 501 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 KCNJ11Q14654 390 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 ASTE1Q2TB18 679 aaPredicted RBP16.6■□□□□ 0.25
CLK3-227ENST00000570296 ACSBG2Q5FVE4 666 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 PLEKHM3Q6ZWE6 761 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 RASGEF1CQ8N431 466 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 PIK3IP1Q96FE7 263 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 BIRC8Q96P09 236 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 TIMP4Q99727 224 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 SFXN3Q9BWM7 321 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 CXorf56Q9H5V9 222 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 EFR3BQ9Y2G0 817 aa16.6■□□□□ 0.25
CLK3-227ENST00000570296 A8MV72 311 aaPredicted RBP16.59■□□□□ 0.25
CLK3-227ENST00000570296 SYF2O95926 243 aaKnown RBP16.59■□□□□ 0.25
CLK3-227ENST00000570296 B3GALT4O96024 378 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 TMIGD3P0DMS9 266 aaPredicted RBP16.59■□□□□ 0.25
CLK3-227ENST00000570296 IMPA1P29218 277 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 PIGAP37287 484 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 SKIV2L2P42285 1042 aaKnown RBP16.59■□□□□ 0.25
CLK3-227ENST00000570296 TRPC1P48995 793 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 MARCKSL1P49006 195 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 ATP5J2P56134 94 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 COPS2P61201 443 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 TBL3Q12788 808 aaKnown RBP16.59■□□□□ 0.25
CLK3-227ENST00000570296 TCEAL1Q15170 157 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 LUZP2Q86TE4 346 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 C17orf64Q86WR6 236 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 SCUBE1Q8IWY4 988 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 TMEM171Q8WVE6 324 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 TRIB1Q96RU8 372 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 SLC30A3Q99726 388 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 FAM118BQ9BPY3 351 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 CALHM2Q9HA72 323 aa16.59■□□□□ 0.25
CLK3-227ENST00000570296 ZNF226Q9NYT6 803 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms