RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 FAM131BQ86XD5 332 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 WDR20Q8TBZ3 569 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 AURKBQ96GD4 344 aaPredicted RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 RTP3Q9BQQ7 232 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 SOX7Q9BT81 388 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 MED28Q9H204 178 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 PIGVQ9NUD9 493 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 PRAMEF33A0A0G2JMD5 474 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 FAM221BA6H8Z2 402 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 SLCO1B7G3V0H7 640 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 G3V2T6 193 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 ADAM12O43184 909 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 PRAMEF10O60809 474 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 RGS11O94810 467 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 LPLP06858 475 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 PRKACGP22612 351 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 ATP5F1P24539 256 aaPredicted RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 RGS19P49795 217 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 KIAA1024LP59773 190 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 ISL1P61371 349 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 PRKG2Q13237 762 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 SLC25A52Q3SY17 297 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 STEAP4Q687X5 459 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 SPESP1Q6UW49 350 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 B3GALNT2Q8NCR0 500 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 FBXO17Q96EF6 278 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 P2RY13Q9BPV8 354 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 PAAF1Q9BRP4 392 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 ZNF436Q9C0F3 470 aaPredicted RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 ELAC1Q9H777 363 aaKnown RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 EXOSC4Q9NPD3 245 aaKnown RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 FAM212BQ9NTI7 297 aaPredicted RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 UBQLN1Q9UMX0 589 aaKnown RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 RAP2CQ9Y3L5 183 aa10.43□□□□□ -0.74
CLK3-226ENST00000569406 NYNRINQ9P2P1 1898 aaKnown RBP10.43□□□□□ -0.74
CLK3-226ENST00000569406 NNMTP40261 264 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 RPS6KA2Q15349 733 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 KIAA0907Q7Z7F0 614 aaPredicted RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 TADA1Q96BN2 335 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 MFSD3Q96ES6 412 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SLC38A3Q99624 504 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 RGS18Q9NS28 235 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 KRT84Q9NSB2 600 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 WASF3Q9UPY6 502 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 PIN4Q9Y237 131 aaKnown RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 ORC5O43913 435 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 RAB3DO95716 219 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 STSP08842 583 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 TSPAN19P0C672 248 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 C6P13671 934 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 TPSB2P20231 275 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 VEGFCP49767 419 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 NAGLUP54802 743 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 ACTR1AP61163 376 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 PURAQ00577 322 aaKnown RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 ADIGQ0VDE8 80 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 ASAH1Q13510 395 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 EIF4EBP2Q13542 120 aaPredicted RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 TPSAB1Q15661 275 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 MPEG1Q2M385 716 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 GFOD2Q3B7J2 385 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SAXO2Q658L1 398 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 ETFRF1Q6IPR1 90 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SEZ6L2Q6UXD5 910 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 LAX1Q8IWV1 398 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 DEFB106AQ8N104 65 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SPATA6LQ8N4H0 392 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 C19orf18Q8NEA5 215 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 OR52K2Q8NGK3 314 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SETD7Q8WTS6 366 aaKnown RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 RNF139Q8WU17 664 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 C14orf144Q96I85 54 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 DUSP16Q9BY84 665 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SMURF1Q9HCE7 757 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 KCNK7Q9Y2U2 307 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SLC6A5Q9Y345 797 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 AP1M2Q9Y6Q5 423 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 SIX6O95475 246 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 EGFP01133 1207 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 ERCC2P18074 760 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 PROX2Q3B8N5 592 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 RAB41Q5JT25 222 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 PRSS36Q5K4E3 855 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 ADGRF1Q5T601 910 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 GALNT5Q7Z7M9 940 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 NPWQ8N729 165 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 NANOGP1Q8N7R0 232 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 OR10H5Q8NGA6 315 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 EBNA1BP2Q99848 306 aaKnown RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 DDX31Q9H8H2 851 aaKnown RBP10.42□□□□□ -0.74
CLK3-226ENST00000569406 XPNPEP3Q9NQH7 507 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 RASSF1Q9NS23 344 aa10.42□□□□□ -0.74
CLK3-226ENST00000569406 LCHNA4D1U4 455 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 PSMD9O00233 223 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 BCKDKO14874 412 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 GRK5P34947 590 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 MAP2K3P46734 347 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 PIK3CGP48736 1102 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 INPP1P49441 399 aa10.41□□□□□ -0.74
CLK3-226ENST00000569406 PSEN2P49810 448 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms