RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 DLX3O60479 287 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PLIN3O60664 434 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PRMT3O60678 531 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 JRKO75564 520 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 SEMA3DO95025 777 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 B3GALT4O96024 378 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 TGFB1P01137 390 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PROCP04070 461 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PRB1P04280 392 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 MYZAPP0CAP1 466 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ICAM2P13598 275 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PTX3P26022 381 aaPredicted RBP12.24□□□□□ -0.45
CLK3-224ENST00000568605 CERS1P27544 350 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PRKAA2P54646 552 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 SNRPNP63162 240 aaKnown RBP12.24□□□□□ -0.45
CLK3-224ENST00000568605 SLC18A2Q05940 514 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 LCP2Q13094 533 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 NSDHLQ15738 373 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 CFAP157Q5JU67 520 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 FRG2Q64ET8 278 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 RIPOR1Q6ZS17 1223 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 CPEB2Q7Z5Q1 589 aaKnown RBP12.24□□□□□ -0.45
CLK3-224ENST00000568605 CNTRLQ7Z7A1 2325 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 NUDT13Q86X67 352 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 KBTBD2Q8IY47 623 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ZNF843Q8N446 348 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 FDCSPQ8NFU4 85 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 OR4F6Q8NGB9 312 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 C8orf44Q96CB5 159 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 NSUN5Q96P11 429 aaKnown RBP12.24□□□□□ -0.45
CLK3-224ENST00000568605 CDK15Q96Q40 435 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 FRG2BQ96QU4 278 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 F2RL3Q96RI0 385 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ZNF382Q96SR6 550 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 SERPINI1Q99574 410 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 LPAR4Q99677 370 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 AICDAQ9GZX7 198 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 LHPPQ9H008 270 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ZNF700Q9H0M5 742 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ZNF160Q9HCG1 818 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ZBTB26Q9HCK0 441 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 LYRM4Q9HD34 91 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PRDM9Q9NQV7 894 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ZNF71Q9NQZ8 489 aaPredicted RBP12.24□□□□□ -0.45
CLK3-224ENST00000568605 LANCL2Q9NS86 450 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PSD3Q9NYI0 1048 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 C5AR2Q9P296 337 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 PHF11Q9UIL8 331 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 ANAPC2Q9UJX6 822 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 DAPP1Q9UN19 280 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 SNX6Q9UNH7 406 aa12.24□□□□□ -0.45
CLK3-224ENST00000568605 KALRNO60229 2985 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 RGS16O15492 202 aaPredicted RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 DPM1O60762 260 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 B4GALT2O60909 372 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 C1QL1O75973 258 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 SCELO95171 688 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 TBX6O95947 436 aaPredicted RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 KRT6AP02538 564 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 KRT6BP04259 564 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 ENO1P06733 434 aaKnown RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 HIST1H1TP22492 207 aaPredicted RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 HMOX2P30519 316 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 KRT6CP48668 564 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 CDH13P55290 713 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 PKNOX1P55347 436 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 RPS13P62277 151 aaKnown RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 RHAGQ02094 409 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 KLRB1Q12918 225 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 CUL3Q13618 768 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 EXT1Q16394 746 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 DEPDC1Q5TB30 811 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 JMJD6Q6NYC1 403 aaPredicted RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 SH2D5Q6ZV89 423 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 GPRIN3Q6ZVF9 776 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 TMEM151BQ8IW70 566 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 ZNF595Q8IYB9 648 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 PLPP5Q8NEB5 264 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 C7orf57Q8NEG2 295 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 WDR20Q8TBZ3 569 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 TRPC4APQ8TEL6 797 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 THOC3Q96J01 351 aaKnown RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 PTCHD1Q96NR3 888 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 QRFPRQ96P65 431 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 SMAD5Q99717 465 aaKnown RBP12.23□□□□□ -0.45
CLK3-224ENST00000568605 NUDT9Q9BW91 350 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 SLC29A3Q9BZD2 475 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 OR51B5Q9H339 312 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 MLXIPLQ9NP71 852 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 NMRK1Q9NWW6 199 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 MS4A12Q9NXJ0 267 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 AHSPQ9NZD4 102 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 EMCNQ9ULC0 261 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 BOD1L1Q8NFC6 3051 aa12.23□□□□□ -0.45
CLK3-224ENST00000568605 B8ZZF3 427 aa12.22□□□□□ -0.45
CLK3-224ENST00000568605 SH3BGRLO75368 114 aa12.22□□□□□ -0.45
CLK3-224ENST00000568605 SEC24DO94855 1032 aaPredicted RBP12.22□□□□□ -0.45
CLK3-224ENST00000568605 SERPINA7P05543 415 aa12.22□□□□□ -0.45
CLK3-224ENST00000568605 CPA3P15088 417 aa12.22□□□□□ -0.45
CLK3-224ENST00000568605 ATP5A1P25705 553 aaKnown RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms