RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ADPRMQ3LIE5 342 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 HIST2H2BCQ6DN03 193 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 SPINK14Q6IE38 97 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 ABHD17CQ6PCB6 329 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 CCDC91Q7Z6B0 441 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 MNS1Q8NEH6 495 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 UBE2E3Q969T4 207 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 SIGLEC12Q96PQ1 595 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 SERINC2Q96SA4 455 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 KLHL1Q9NR64 748 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 PNO1Q9NRX1 252 aaKnown RBP19.42■□□□□ 0.7
CLN3-219ENST00000565778 NINJ2Q9NZG7 142 aa19.42■□□□□ 0.7
CLN3-219ENST00000565778 MRPS33Q9Y291 106 aaKnown RBP19.42■□□□□ 0.7
CLN3-219ENST00000565778 SAGE2PA6NJ88 616 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 TBX6O95947 436 aaPredicted RBP19.41■□□□□ 0.7
CLN3-219ENST00000565778 PCNAP12004 261 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 CD46P15529 392 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 TYK2P29597 1187 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 MTTPP55157 894 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 HSD17B7P56937 341 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 IRF9Q00978 393 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 SLC13A2Q13183 592 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 GFRALQ6UXV0 394 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 HORMAD2Q8N7B1 307 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 FAM47BQ8NA70 645 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 SRFBP1Q8NEF9 429 aaKnown RBP19.41■□□□□ 0.7
CLN3-219ENST00000565778 DEFB126Q9BYW3 111 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 TSPYL1Q9H0U9 437 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 SNX15Q9NRS6 342 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 DMGDHQ9UI17 866 aaKnown RBP19.41■□□□□ 0.7
CLN3-219ENST00000565778 ANGPTL3Q9Y5C1 460 aa19.41■□□□□ 0.7
CLN3-219ENST00000565778 A0A096LPK6 155 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 HMX2A2RU54 273 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 MYO1DO94832 1006 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 EPB42P16452 691 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 KCNK10P57789 538 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 RCN2Q14257 317 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 ACAP2Q15057 778 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 MED27Q6P2C8 311 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 KLC3Q6P597 504 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 ZNF595Q8IYB9 648 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 CENPLQ8N0S6 344 aaPredicted RBP19.4■□□□□ 0.7
CLN3-219ENST00000565778 LGI4Q8N135 537 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 TEX9Q8N6V9 391 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 MDS2Q8NDY4 140 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 NFAM1Q8NET5 270 aaPredicted RBP19.4■□□□□ 0.7
CLN3-219ENST00000565778 RHEBL1Q8TAI7 183 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 ADAMTS18Q8TE60 1221 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 VPS11Q9H270 941 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 PRDM7Q9NQW5 492 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 LRFN1Q9P244 771 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 PCDHGB6Q9Y5F9 930 aa19.4■□□□□ 0.7
CLN3-219ENST00000565778 USP9YO00507 2555 aaPredicted RBP19.4■□□□□ 0.7
CLN3-219ENST00000565778 UTP20O75691 2785 aaKnown RBP19.39■□□□□ 0.7
CLN3-219ENST00000565778 SH3BGRLO75368 114 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 KLHL2O95198 593 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 TGFB1P01137 390 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 CTAGE8P0CG41 777 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 MTHFD2P13995 350 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 GFAPP14136 432 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 MST1P26927 711 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 CERS1P27544 350 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 EEF1DP29692 281 aaKnown RBP19.39■□□□□ 0.69
CLN3-219ENST00000565778 TDGF1P3P51864 188 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 HNRNPFP52597 415 aaKnown RBP19.39■□□□□ 0.69
CLN3-219ENST00000565778 LIM2P55344 173 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 PER3P56645 1201 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 PMP22Q01453 160 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 PFKFB4Q16877 469 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 CHSY3Q70JA7 882 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 RELL1Q8IUW5 271 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 SCUBE1Q8IWY4 988 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 CTAGE4Q8IX94 777 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 NOA1Q8NC60 698 aaKnown RBP19.39■□□□□ 0.69
CLN3-219ENST00000565778 TMEM52Q8NDY8 209 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 ZNF473Q8WTR7 871 aaKnown RBP19.39■□□□□ 0.69
CLN3-219ENST00000565778 KCNC2Q96PR1 638 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 HES7Q9BYE0 225 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 ROGDIQ9GZN7 287 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 ACSS3Q9H6R3 686 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 SEC14L3Q9UDX4 400 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 DAPP1Q9UN19 280 aa19.39■□□□□ 0.69
CLN3-219ENST00000565778 A0A1B0GUH1 482 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 CCDC189A1A4V9 331 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 CYR61O00622 381 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 UNC5CO95185 931 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 ACSL3O95573 720 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 SP1P08047 785 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 STSP08842 583 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 TPP2P29144 1249 aaPredicted RBP19.38■□□□□ 0.69
CLN3-219ENST00000565778 SERPINB8P50452 374 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 CLCN2P51788 898 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 MAPKAPK3Q16644 382 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 AP5B1Q2VPB7 878 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 TMEM35AQ53FP2 167 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 UBAP2Q5T6F2 1119 aaKnown RBP19.38■□□□□ 0.69
CLN3-219ENST00000565778 SLC25A25Q6KCM7 469 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 MAMDC2Q7Z304 686 aaPredicted RBP19.38■□□□□ 0.69
CLN3-219ENST00000565778 CLNKQ7Z7G1 428 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 MYLK4Q86YV6 388 aaPredicted RBP19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms