RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 P04436 131 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 MPC1LP0DKB6 136 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 STIP1P31948 543 aaKnown RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SKIV2L2P42285 1042 aaKnown RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 DNASE1L1P49184 302 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 RAB8AP61006 207 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 RGS1Q08116 209 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 NAE1Q13564 534 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 PWP1Q13610 501 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 BMPR2Q13873 1038 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SPA17Q15506 151 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 FBXL19-AS1Q494R0 122 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 XKR6Q5GH73 641 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 CATSPEREQ5SY80 951 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 CES3Q6UWW8 571 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 RTL4Q6ZR62 310 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 MAATS1Q7Z4T9 603 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 CXorf67Q86X51 503 aaPredicted RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SPNS2Q8IVW8 549 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 ULK2Q8IYT8 1036 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 FBXW8Q8N3Y1 598 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 TBC1D19Q8N5T2 526 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 TNIP2Q8NFZ5 429 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SLC35B2Q8TB61 432 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF592Q92610 1267 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 KIAA1191Q96A73 305 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 TCF12Q99081 682 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SLC30A3Q99726 388 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 CCDC68Q9H2F9 335 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SACM1LQ9NTJ5 587 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 TRMT1Q9NXH9 659 aaKnown RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 TUBA8Q9NY65 449 aaPredicted RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 BFARQ9NZS9 450 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 MYOTQ9UBF9 498 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 TRPS1Q9UHF7 1281 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF223Q9UK11 482 aaPredicted RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 ZNF148Q9UQR1 794 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 PCDHA13Q9Y5I0 950 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 SEC23IPQ9Y6Y8 1000 aaKnown RBP6.78□□□□□ -1.32
VPS4A-203ENST00000564399 VPS13CQ709C8 3753 aa6.78□□□□□ -1.32
VPS4A-203ENST00000564399 MED12LQ86YW9 2145 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 URADA6NGE7 173 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 EEF1E1-BLOC1S5C9J1V9 151 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CASKO14936 926 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 EEF1E1O43324 174 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 GOSR1O95249 250 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 HRGP04196 525 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 ENO3P13929 434 aaPredicted RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 BMP7P18075 431 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 PPP2R1BP30154 601 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 NPY2RP49146 381 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CCR8P51685 355 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CLCN7P51798 805 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 AGFG1P52594 562 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 ADARP55265 1226 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 WNT3P56703 355 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 SLC13A2Q13183 592 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CBLBQ13191 982 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 TERF2Q15554 542 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 PHKG1Q16816 387 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 AGTRAPQ6RW13 159 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 LCTLQ6UWM7 567 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 HSDL2Q6YN16 418 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 MBOAT1Q6ZNC8 495 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CAPN12Q6ZSI9 719 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 SEM1Q6ZVN7 128 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 PIWIL4Q7Z3Z4 852 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 YTHDF3Q7Z739 585 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 PRUNE1Q86TP1 453 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CNGA4Q8IV77 575 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 PALM2Q8IXS6 379 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 LIX1Q8N485 282 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 NAXEQ8NCW5 288 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 GIMAP7Q8NHV1 300 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 UTP15Q8TED0 518 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 ATG4AQ8WYN0 398 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 MFSD3Q96ES6 412 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 SCYL1Q96KG9 808 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 SGCZQ96LD1 299 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 RASL10BQ96S79 203 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 AARSD1Q9BTE6 412 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 IL22Q9GZX6 179 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 EPB41L4BQ9H329 900 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 CLK4Q9HAZ1 481 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 SEMA4BQ9NPR2 832 aaPredicted RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 SPRR3Q9UBC9 169 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 ZNF629Q9UEG4 869 aaPredicted RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 EIF3LQ9Y262 564 aaKnown RBP6.77□□□□□ -1.33
VPS4A-203ENST00000564399 VPS9D1Q9Y2B5 631 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 MMACHCQ9Y4U1 282 aa6.77□□□□□ -1.33
VPS4A-203ENST00000564399 C15orf38-AP3S2A0A0A6YYH1 394 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 A0A1W2PPR1 153 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TCRBV7S2A1N4TA0A589 114 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TRBC2A0A5B9 178 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 SYCE3A1L190 88 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 CTAGE9A4FU28 777 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TRIM64A6NGJ6 449 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 TRIM64BA6NI03 449 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 AHRRA9YTQ3 701 aa6.76□□□□□ -1.33
VPS4A-203ENST00000564399 AKR1B15C9JRZ8 316 aaPredicted RBP6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms