RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PGGT1BP53609 377 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 NUP107P57740 925 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 PDAP1Q13442 181 aaKnown RBP15.27■□□□□ 0.04
CLN3-208ENST00000561505 GXYLT1Q4G148 440 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 XKR6Q5GH73 641 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 FAM45BPQ6NSW5 357 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 PAOXQ6QHF9 649 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 SLCO4C1Q6ZQN7 724 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 ZNF595Q8IYB9 648 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 TMEM156Q8N614 296 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 TMEM52Q8NDY8 209 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 OR2M7Q8NG81 312 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 FAM45AQ8TCE6 357 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 SLCO2A1Q92959 643 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 MS4A6EQ96DS6 147 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 TMUB1Q9BVT8 246 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 UCK2Q9BZX2 261 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 PITHD1Q9GZP4 211 aaPredicted RBP15.27■□□□□ 0.04
CLN3-208ENST00000561505 ADAP2Q9NPF8 381 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 MYOTQ9UBF9 498 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 SLC22A14Q9Y267 594 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 JRKLQ9Y4A0 524 aa15.27■□□□□ 0.04
CLN3-208ENST00000561505 NIPBLQ6KC79 2804 aaeCLIP15.27■□□□□ 0.03
CLN3-208ENST00000561505 ZNF407Q9C0G0 2248 aa15.27■□□□□ 0.03
CLN3-208ENST00000561505 PINLYPA6NC86 204 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 NKX2-6A6NCS4 301 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 USP27XA6NNY8 438 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 DNALI1O14645 258 aaPredicted RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 KLK8O60259 260 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 GUCA1CO95843 209 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 C1GALT1C1LP0DN25 315 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 ZNF37AP17032 561 aaPredicted RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 HNRNPH1P31943 449 aaKnown RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 HNF4AP41235 474 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 SLC6A12P48065 614 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 HNRNPFP52597 415 aaKnown RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 RAB38P57729 211 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 GPR85P60893 370 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 STXBP1P61764 594 aaKnown RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 ELAVL1Q15717 326 aaKnown RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 TOR1AIP1Q5JTV8 583 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 STEAP4Q687X5 459 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 CCDC71Q8IV32 467 aaPredicted RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 TTLQ8NG68 377 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 OR8K3Q8NH51 312 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 ACTRT1Q8TDG2 376 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 GRK7Q8WTQ7 553 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 NCLNQ969V3 563 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 POM121Q96HA1 1249 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 TSNARE1Q96NA8 513 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 NAP1L3Q99457 506 aaPredicted RBP15.26■□□□□ 0.03
CLN3-208ENST00000561505 PRTFDC1Q9NRG1 225 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 KCMF1Q9P0J7 381 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 FBXW2Q9UKT8 454 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 DYRK1BQ9Y463 629 aa15.26■□□□□ 0.03
CLN3-208ENST00000561505 GOLGA6L6A8MZA4 724 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 CLEC3AO75596 197 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 PPP2R1BP30154 601 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 HNMTP50135 292 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 BTN3A2P78410 334 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 PMPCAQ10713 525 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 FOXO1Q12778 655 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 CBLBQ13191 982 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 RTL6Q6ICC9 239 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 TMIGD1Q6UXZ0 262 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 TMPRSS11BQ86T26 416 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 TMEM132CQ8N3T6 1108 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 MORN4Q8NDC4 146 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 PTPMT1Q8WUK0 201 aaPredicted RBP15.25■□□□□ 0.03
CLN3-208ENST00000561505 RASL10BQ96S79 203 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 WDR83Q9BRX9 315 aaKnown RBP15.25■□□□□ 0.03
CLN3-208ENST00000561505 TTYH2Q9BSA4 534 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 MCMBPQ9BTE3 642 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 DEFB127Q9H1M4 99 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 RHBGQ9H310 441 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 SLC17A6Q9P2U8 582 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 VTI1BQ9UEU0 232 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 OARD1Q9Y530 152 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 FAM215AQ9Y5M1 114 aa15.25■□□□□ 0.03
CLN3-208ENST00000561505 PABPN1LA6NDY0 278 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 PGRMC1O00264 195 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 CDC7O00311 574 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 CLDN4O14493 209 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 BCKDKO14874 412 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 NRDCO43847 1150 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 SUSD5O60279 629 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 CDC40O60508 579 aaKnown RBP eCLIP15.24■□□□□ 0.03
CLN3-208ENST00000561505 CTNSO60931 367 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 BANF1O75531 89 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 OR2J2O76002 312 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 OR6B1O95007 311 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 GNAZP19086 355 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 CNR1P21554 472 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 DNAJA1P31689 397 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 PPIAP62937 165 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 CCZ1BP86790 482 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 CCZ1P86791 482 aaPredicted RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 RBBP5Q15291 538 aaKnown RBP15.24■□□□□ 0.03
CLN3-208ENST00000561505 NDUFAF5Q5TEU4 345 aa15.24■□□□□ 0.03
CLN3-208ENST00000561505 CES4AQ5XG92 561 aa15.24■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms