RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 ZSCAN12O43309 604 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 ERI3O43414 337 aaKnown RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 PRKNO60260 465 aaPredicted RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 PRAMEF4O60810 478 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 CLDN14O95500 239 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 TBX6O95947 436 aaPredicted RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 AGAP20933 346 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 SLC6A12P48065 614 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 PLA2G16P53816 162 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 GPR85P60893 370 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 MRPS25P82663 173 aaKnown RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 SLBPQ14493 270 aaKnown RBP eCLIP10.85□□□□□ -0.67
USP3-220ENST00000561381 PRAMEF9Q5VWM5 478 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 CAPN12Q6ZSI9 719 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 SYDE1Q6ZW31 735 aaPredicted RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 FRA10AC1Q70Z53 315 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 MDGA2Q7Z553 956 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 VN1R5Q7Z5H4 357 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 CLNKQ7Z7G1 428 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 KLHDC8AQ8IYD2 350 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 ARMC10Q8N2F6 343 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 FAM47BQ8NA70 645 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 ARMC2Q8NEN0 867 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 B3GNT7Q8NFL0 401 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 SREK1Q8WXA9 508 aaKnown RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 CCT6BQ92526 530 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 ANKRD7Q92527 254 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 GAL3ST3Q96A11 431 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 TMEM125Q96AQ2 219 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 MS4A6EQ96DS6 147 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 LURAP1Q96LR2 239 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 QRFPRQ96P65 431 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 DMRTA2Q96SC8 542 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 MCMBPQ9BTE3 642 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 CAB39LQ9H9S4 337 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 LIN28AQ9H9Z2 209 aaKnown RBP10.85□□□□□ -0.67
USP3-220ENST00000561381 FBXW2Q9UKT8 454 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 MMACHCQ9Y4U1 282 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 HRH3Q9Y5N1 445 aa10.85□□□□□ -0.67
USP3-220ENST00000561381 TEP1Q99973 2627 aaKnown RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 PDZD2O15018 2839 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 A0A1B0GTH9 108 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 LRIT2A6NDA9 550 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 CXorf49A8MYA2 514 aaPredicted RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 E7ESA3 106 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 CDK2AP1O14519 115 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 TFECO14948 347 aaPredicted RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 TAPBPO15533 448 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 PEX1O43933 1283 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 HS6ST1O60243 411 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 ITGA10O75578 1167 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 WISP3O95389 354 aaPredicted RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 GNAZP19086 355 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 HNMTP50135 292 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 CLCN2P51788 898 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 GPR143P51810 404 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 KRTAP10-9P60411 292 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 STXBP1P61764 594 aaKnown RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 TMIGD1Q6UXZ0 262 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 ADAMTSL2Q86TH1 951 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 CYP4Z2PQ8N1L4 340 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 NCLNQ969V3 563 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 ESAMQ96AP7 390 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 VPS39Q96JC1 886 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 FAR2Q96K12 515 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 CSF3RQ99062 836 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 TMEM79Q9BSE2 394 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 RHOJQ9H4E5 214 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 GPAMQ9HCL2 828 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 PRTFDC1Q9NRG1 225 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 PPT2Q9UMR5 302 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 KLF13Q9Y2Y9 288 aaPredicted RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 MTO1Q9Y2Z2 717 aaKnown RBP10.84□□□□□ -0.67
USP3-220ENST00000561381 SNX24Q9Y343 169 aa10.84□□□□□ -0.67
USP3-220ENST00000561381 TMEM200CA6NKL6 621 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 EFCAB8A8MWE9 144 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 E9PLN8 166 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 CYR61O00622 381 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 PRRG2O14669 202 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 PHGDHO43175 533 aaKnown RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 CDC40O60508 579 aaKnown RBP eCLIP10.83□□□□□ -0.68
USP3-220ENST00000561381 H2AFYO75367 372 aaKnown RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 PDE9AO76083 593 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 TPOP07202 933 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 CD22P20273 847 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 CERS1P27544 350 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 GMPRP36959 345 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 RPL21P46778 160 aaKnown RBP10.83□□□□□ -0.68
USP3-220ENST00000561381 HSPA7P48741 367 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 RAB38P57729 211 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 SLC13A2Q13183 592 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 TGFBIQ15582 683 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 CMPK2Q5EBM0 449 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 XKR6Q5GH73 641 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 LIAT1Q6ZQX7 453 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 CD163Q86VB7 1156 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 ZBED8Q8IZ13 594 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 MARVELD2Q8N4S9 558 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 TMEM156Q8N614 296 aa10.83□□□□□ -0.68
USP3-220ENST00000561381 OR52N2Q8NGI0 321 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms