RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 HSPA7P48741 367 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 ARFIP1P53367 373 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 CHAF1BQ13112 559 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 CHIT1Q13231 466 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 BIKQ13323 160 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 EFTUD2Q15029 972 aaKnown RBP eCLIP8.19□□□□□ -1.11e-7■■■□□ 14.6
USP3-208ENST00000558285 TLR1Q15399 786 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 NSDHLQ15738 373 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 DEFB134Q4QY38 66 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 VWA2Q5GFL6 755 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 CATSPEREQ5SY80 951 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 ABHD17BQ5VST6 288 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 LIPJQ5W064 366 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 B3GNTL1Q67FW5 361 aaPredicted RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 KIRREL2Q6UWL6 708 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 SLCO4C1Q6ZQN7 724 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 CMC1Q7Z7K0 106 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 ISCA2Q86U28 154 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 MYLK4Q86YV6 388 aaPredicted RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 ZC3H7AQ8IWR0 971 aaKnown RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 SLC5A8Q8N695 610 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 AMER3Q8N944 861 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 ACMSDQ8TDX5 336 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 WDR34Q96EX3 536 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 THOC3Q96J01 351 aaKnown RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 KCNC2Q96PR1 638 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 OR4K3Q96R72 315 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 SLX1AQ9BQ83 275 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 WDR77Q9BQA1 342 aaPredicted RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 MRPL57Q9BQC6 102 aaKnown RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 TRIM55Q9BYV6 548 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 SEMA4CQ9C0C4 833 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 SLC22A11Q9NSA0 550 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 AHSPQ9NZD4 102 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 MAP10Q9P2G4 905 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 ZNF232Q9UNY5 417 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 PLAAQ9Y263 795 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 B3GNT3Q9Y2A9 372 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 MRPS2Q9Y399 296 aaKnown RBP8.19□□□□□ -1.1
USP3-208ENST00000558285 MMACHCQ9Y4U1 282 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 FREM2Q5SZK8 3169 aa8.19□□□□□ -1.1
USP3-208ENST00000558285 LOC102723996A0A087X1L8 192 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 MAGEB17A8MXT2 336 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SGK494L7N484 410 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SOCS6O14544 535 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 LCE2BO14633 110 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 P2RX6O15547 441 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 FOXS1O43638 330 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 PRMT3O60678 531 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 RDH16O75452 317 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 WISP3O95389 354 aaPredicted RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 CTSBP07858 339 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 IDO1P14902 403 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 PPP2R1BP30154 601 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 TLX1P31314 330 aaPredicted RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 RAP1GDS1P52306 607 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 MTTPP55157 894 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 YBX1P67809 324 aaKnown RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 ARG2P78540 354 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 TLE1Q04724 770 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 OR4D1Q15615 310 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 TRADDQ15628 312 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 PFKFB4Q16877 469 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SPRED3Q2MJR0 410 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 AP5B1Q2VPB7 878 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 GALNTL6Q49A17 601 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 TOR1AIP1Q5JTV8 583 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SHISA6Q6ZSJ9 500 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 CPEB2Q7Z5Q1 589 aaKnown RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 AFAP1L2Q8N4X5 818 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 KCT2Q8NC54 265 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 ZNF740Q8NDX6 193 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 OR2L5Q8NG80 312 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 PPP4R1Q8TF05 950 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 CCDC126Q96EE4 140 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 CMTM7Q96FZ5 175 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 ZNF354BQ96LW1 612 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SERINC2Q96SA4 455 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 TBCDQ9BTW9 1192 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SLC6A16Q9GZN6 736 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 REXO4Q9GZR2 422 aaKnown RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 ZNF700Q9H0M5 742 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 STMN4Q9H169 189 aaPredicted RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 MRPL46Q9H2W6 279 aaKnown RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 CLMPQ9H6B4 373 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 ZNF160Q9HCG1 818 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 MS4A12Q9NXJ0 267 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 HCN3Q9P1Z3 774 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 PSMC3IPQ9P2W1 217 aaPredicted RBP8.18□□□□□ -1.1
USP3-208ENST00000558285 COPG2Q9UBF2 871 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 SCOCQ9UIL1 159 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 MID2Q9UJV3 735 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 ATRXP46100 2492 aa8.18□□□□□ -1.1
USP3-208ENST00000558285 C3orf80F5H4A9 247 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 STX16-NPEPL1H3BU86 382 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 STX16O14662 325 aa8.17□□□□□ -1.1
USP3-208ENST00000558285 ERI3O43414 337 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 LCMT2O60294 686 aaKnown RBP8.17□□□□□ -1.1
USP3-208ENST00000558285 GUCY1B2O75343 617 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms