RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 CTSKP43235 329 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 HNRNPFP52597 415 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 TAP2Q03519 686 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 PTGES3Q15185 160 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 TNFAIP8L2Q6P589 184 aaPredicted RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 WASH2PQ6VEQ5 465 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 C12orf40Q86WS4 652 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ZNF547Q8IVP9 402 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.33□□□□□ -0.44
LDLR-207ENST00000558013 RAB8BQ92930 207 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 CDADC1Q9BWV3 514 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ZNF282Q9UDV7 671 aaPredicted RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 IL36AQ9UHA7 158 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 ZNF229Q9UJW7 825 aa12.33□□□□□ -0.44
LDLR-207ENST00000558013 RBMX2Q9Y388 322 aaKnown RBP12.33□□□□□ -0.44
LDLR-207ENST00000558013 TMEM221A6NGB7 291 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 CLDN24A6NM45 220 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 FFAR1O14842 300 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 ADAMDEC1O15204 470 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 SPINT1O43278 529 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 SOX14O95416 240 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 HOXB6P17509 224 aaKnown RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 MMP12P39900 470 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 OPRD1P41143 372 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 EEF1A2Q05639 463 aaKnown RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 ELP6Q0PNE2 266 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 PUM1Q14671 1186 aaKnown RBP eCLIP12.32□□□□□ -0.449e-6■■■■□ 23.7
LDLR-207ENST00000558013 ZNF404Q494X3 552 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 ARMCX4Q5H9R4 360 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 STEAP3Q658P3 488 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 CAMKMTQ7Z624 323 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 SPRED2Q7Z698 418 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 RBM45Q8IUH3 476 aaKnown RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 STX19Q8N4C7 294 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 SLAMF7Q9NQ25 335 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 TMEM39AQ9NV64 488 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 PAIP2BQ9ULR5 123 aaKnown RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 MYO15AQ9UKN7 3530 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 CKAP5Q14008 2032 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 DCDC1P59894 354 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 WDR5P61964 334 aaKnown RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 DEFB115Q30KQ5 88 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 ZNF805Q5CZA5 627 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 ANKRD33Q7Z3H0 272 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 VN1R5Q7Z5H4 357 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 ZNF605Q86T29 641 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 AQP11Q8NBQ7 271 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 OTUB1Q96FW1 271 aaPredicted RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 FOPNLQ96NB1 174 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 TMEM98Q9Y2Y6 226 aa12.32□□□□□ -0.44
LDLR-207ENST00000558013 SPTBN5Q9NRC6 3674 aaKnown RBP12.32□□□□□ -0.44
LDLR-207ENST00000558013 TRBC2A0A5B9 178 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TRIM43BA6NCK2 446 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 LIM2P55344 173 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 HTRA3P83110 453 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 LRRC74AQ0VAA2 488 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 FADDQ13158 208 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 MED22Q15528 200 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TEAD4Q15561 434 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 FAM83HQ6ZRV2 1179 aaPredicted RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 SLC46A3Q7Z3Q1 461 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 CACUL1Q86Y37 369 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 LYSMD2Q8IV50 215 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 OR52N2Q8NGI0 321 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 CXorf36Q9H7Y0 433 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 ATAD3AQ9NVI7 634 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 IMPAD1Q9NX62 359 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 GIN1Q9NXP7 522 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 ATP6V1HQ9UI12 483 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 DUSP12Q9UNI6 340 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 SPEGQ15772 3267 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TRBV4-1A0A0J9YWV2 114 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 A0A1W2PRB8 838 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 METTL15A6NJ78 407 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 SSX4O60224 188 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 STATHP02808 62 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 C1GALT1C1LP0DN25 315 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 HSD3B1P14060 373 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 HSD3B2P26439 372 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 PPP5CP53041 499 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 LSM11P83369 360 aaKnown RBP eCLIP12.31□□□□□ -0.44
LDLR-207ENST00000558013 CNTN1Q12860 1018 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 DMC1Q14565 340 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 CYP4Z2PQ8N1L4 340 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 CELF5Q8N6W0 485 aaKnown RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 POP5Q969H6 163 aaKnown RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 BHLHE41Q9C0J9 482 aaPredicted RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 C11orf16Q9NQ32 467 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TAS2R9Q9NYW1 312 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TAAR2Q9P1P5 351 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 A0A0G2JN53 185 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 MMP20O60882 483 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 GPR37L1O60883 481 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 LILRB5O75023 590 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 TBX6O95947 436 aaPredicted RBP12.31□□□□□ -0.44
LDLR-207ENST00000558013 CNR2P34972 360 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 IRS1P35568 1242 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 ALDH9A1P49189 494 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 RGS6P49758 472 aa12.31□□□□□ -0.44
LDLR-207ENST00000558013 MNX1P50219 401 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms