RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 RTCAO00442 366 aaKnown RBP11.82□□□□□ -0.52
LDLR-205ENST00000557933 SLC16A8O95907 504 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 CKBP12277 381 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 IL7P13232 177 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 PRKCAP17252 672 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 PDHA2P29803 388 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 CHI3L1P36222 383 aaPredicted RBP11.82□□□□□ -0.52
LDLR-205ENST00000557933 ZNF45Q02386 682 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 CSTF3Q12996 717 aaKnown RBP11.82□□□□□ -0.52
LDLR-205ENST00000557933 HNRNPA0Q13151 305 aaKnown RBP11.82□□□□□ -0.52
LDLR-205ENST00000557933 SCARB2Q14108 478 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 SPDYE7PQ495Y7 208 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 OR2G6Q5TZ20 316 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 WASH2PQ6VEQ5 465 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 TMPRSS11AQ6ZMR5 421 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 DEF8Q6ZN54 512 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 ATCAYQ86WG3 371 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 LACC1Q8IV20 430 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 DBF4BQ8NFT6 615 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 TESCQ96BS2 214 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 RNF31Q96EP0 1072 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 CEP295NLQ96MC4 621 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 OPALINQ96PE5 141 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 TM9SF2Q99805 663 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 IRF2BPLQ9H1B7 796 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 BRD9Q9H8M2 597 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 HHATLQ9HCP6 504 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 GPR52Q9Y2T5 361 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 PEX16Q9Y5Y5 336 aa11.82□□□□□ -0.52
LDLR-205ENST00000557933 OR6C70A6NIJ9 312 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 TMCC2O75069 709 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 GPLD1P80108 840 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 SMUG1Q53HV7 270 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 FAM209AQ5JX71 171 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 KIAA1841Q6NSI8 718 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 CCDC190Q86UF4 302 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 NPAS3Q8IXF0 933 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 UBQLNLQ8IYU4 475 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 TCEANCQ8N8B7 351 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 C11orf65Q8NCR3 313 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 HUS1BQ8NHY5 278 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 WDR48Q8TAF3 677 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 OR4K3Q96R72 315 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 POLR2J2Q9GZM3 115 aaKnown RBP11.81□□□□□ -0.52
LDLR-205ENST00000557933 CRISPLD2Q9H0B8 497 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 C11orf54Q9H0W9 315 aaPredicted RBP11.81□□□□□ -0.52
LDLR-205ENST00000557933 COMMD3Q9UBI1 195 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 MOSPD1Q9UJG1 213 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 TBKBP1A7MCY6 615 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 NRG2O14511 850 aaPredicted RBP11.81□□□□□ -0.52
LDLR-205ENST00000557933 ADAMDEC1O15204 470 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 INPPL1O15357 1258 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 CCNB2O95067 398 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 GADD45GO95257 159 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 CBLP22681 906 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 OPRD1P41143 372 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 SELENOWP63302 87 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 RAE1P78406 368 aaKnown RBP11.81□□□□□ -0.52
LDLR-205ENST00000557933 PTSQ03393 145 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 PRKCDQ05655 676 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 VEPH1Q14D04 833 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 Q6ZVL8 140 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 SORCS1Q8WY21 1168 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 DIRAS2Q96HU8 199 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 NMNAT1Q9HAN9 279 aaPredicted RBP11.81□□□□□ -0.52
LDLR-205ENST00000557933 TMEM161AQ9NX61 479 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 KCTD5Q9NXV2 234 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 IL20RAQ9UHF4 553 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 ITGB1BP2Q9UKP3 347 aa11.81□□□□□ -0.52
LDLR-205ENST00000557933 ARID1BQ8NFD5 2236 aaPredicted RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 TRBC2A0A5B9 178 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 OR10H3O60404 316 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 HBQ1P09105 142 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ALPPL2P10696 532 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ALDH9A1P49189 494 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 GALK2Q01415 458 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CAMK2BQ13554 666 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 SEC23BQ15437 767 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 THOC6Q86W42 341 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 RAB43Q86YS6 212 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CMTM8Q8IZV2 173 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 GHDCQ8N2G8 530 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 DNAJC5GQ8N7S2 189 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CHST14Q8NCH0 376 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 RSPO3Q9BXY4 272 aaPredicted RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 TVP23BQ9NYZ1 205 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 EXO1Q9UQ84 846 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 SPTBN5Q9NRC6 3674 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 A0A1W2PQ45 241 aaPredicted RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 A0A1W2PQY0 241 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 GSAPA4D1B5 854 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ARHGEF33A8MVX0 844 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ERVH48-1M5A8F1 160 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 SCAMP2O15127 329 aaKnown RBP11.8□□□□□ -0.52
LDLR-205ENST00000557933 SLITRK5O94991 958 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 CD79BP40259 229 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 NSG1P42857 185 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 MICAQ29983 383 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 PYDC2Q56P42 97 aa11.8□□□□□ -0.52
LDLR-205ENST00000557933 ZNF544Q6NX49 715 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms