RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 ZNF30P17039 623 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 MYL12AP19105 171 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 RPS3P23396 243 aaKnown RBP eCLIP14.25□□□□□ -0.13
CUX1-215ENST00000556210 NCBP2P52298 156 aaKnown RBP eCLIP14.25□□□□□ -0.136e-7■■□□□ 13.5
CUX1-215ENST00000556210 NCF4Q15080 339 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 COX20Q5RI15 118 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 LIPIQ6XZB0 460 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 C10orf53Q8N6V4 93 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 RDH12Q96NR8 316 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 TBX5Q99593 518 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 REEP4Q9H6H4 257 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 CXXC1Q9P0U4 656 aaPredicted RBP14.25□□□□□ -0.13
CUX1-215ENST00000556210 DNMT3BQ9UBC3 853 aaKnown RBP14.25□□□□□ -0.13
CUX1-215ENST00000556210 POU2F3Q9UKI9 436 aa14.25□□□□□ -0.13
CUX1-215ENST00000556210 MRPS7Q9Y2R9 242 aaKnown RBP14.25□□□□□ -0.13
CUX1-215ENST00000556210 A0A1W2PP55 124 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 AP2A2O94973 939 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 CTSAP10619 480 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 KRT20P35900 424 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 NR4A2P43354 598 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 B4GALNT1Q00973 533 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 GRSF1Q12849 480 aaKnown RBP eCLIP14.24□□□□□ -0.13
CUX1-215ENST00000556210 CLCA4Q14CN2 919 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 ATAD3BQ5T9A4 648 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 VN1R5Q7Z5H4 357 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 CADM3Q8N126 398 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 DEPDC4Q8N2C3 294 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 CELF5Q8N6W0 485 aaKnown RBP14.24□□□□□ -0.13
CUX1-215ENST00000556210 EFCAB11Q9BUY7 163 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 KLHL3Q9UH77 587 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 CORO2BQ9UQ03 480 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 PDPK1O15530 556 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 RPN2P04844 631 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 CEBPBP17676 345 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 CD9P21926 228 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 TAS2R41P59536 307 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 PPIGQ13427 754 aaKnown RBP eCLIP14.24□□□□□ -0.139e-7■■■□□ 18.1
CUX1-215ENST00000556210 HEPACAMQ14CZ8 416 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 TPRG1LQ5T0D9 272 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 OR4E2Q8NGC2 313 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 IL21Q9HBE4 155 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 INIPQ9NRY2 104 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 GULP1Q9UBP9 304 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 RP1L1Q8IWN7 2480 aaPredicted RBP14.24□□□□□ -0.13
CUX1-215ENST00000556210 H7C0S8 307 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 TLX2O43763 284 aaPredicted RBP14.24□□□□□ -0.13
CUX1-215ENST00000556210 ETHE1O95571 254 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 C1GALT1C1LP0DN25 315 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 TEAD4Q15561 434 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 TSTQ16762 297 aaKnown RBP14.24□□□□□ -0.13
CUX1-215ENST00000556210 ZFP69Q49AA0 526 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 SPIN4Q56A73 249 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 TCEANCQ8N8B7 351 aa14.24□□□□□ -0.13
CUX1-215ENST00000556210 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.24□□□□□ -0.13
CUX1-215ENST00000556210 WASHC1A8K0Z3 465 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 OR12D1P0DN82 309 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 TCEA1P23193 301 aaKnown RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 RGNQ15493 299 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 SLC5A12Q1EHB4 618 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 RNASE12Q5GAN4 147 aaKnown RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 LIPJQ5W064 366 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 WASH2PQ6VEQ5 465 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 DTX3Q8N9I9 347 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 PDLIM5Q96HC4 596 aaKnown RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 Q96MT0 163 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 CCDC3Q9BQI4 270 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 ADAP2Q9NPF8 381 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 B3GNT3Q9Y2A9 372 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 NDUFS4O43181 175 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 NFATC1O95644 943 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 CXCR2P25025 360 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 CTU2Q2VPK5 515 aaKnown RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 SOWAHCQ53LP3 525 aaPredicted RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 TMEM31Q5JXX7 168 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 OR4N5Q8IXE1 308 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 IQCF1Q8N6M8 205 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 OR5D16Q8NGK9 328 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 CXorf40BQ96DE9 158 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 ZNF607Q96SK3 696 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 NTN4Q9HB63 628 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 KLHL28Q9NXS3 571 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 TEKT2Q9UIF3 430 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 A8MV72 311 aaPredicted RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 SCAMP2O15127 329 aaKnown RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 RASGRP1O95267 797 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 HPRP00739 348 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 BPIFB1Q8TDL5 484 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 POLR2J2Q9GZM3 115 aaKnown RBP14.23□□□□□ -0.13
CUX1-215ENST00000556210 DSN1Q9H410 356 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 TAS2R9Q9NYW1 312 aa14.23□□□□□ -0.13
CUX1-215ENST00000556210 PLXNB2O15031 1838 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TCRBV5S2A0A599 114 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TMCC2O75069 709 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 IMPA1P29218 277 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 MASP1P48740 699 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 DAPP51397 102 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 HOXC5Q00444 222 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 CPZQ66K79 652 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 SPRED2Q7Z698 418 aa14.22□□□□□ -0.13
CUX1-215ENST00000556210 TRAM1L1Q8N609 369 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms