RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 EPB41L4BQ9H329 900 aa14.42□□□□□ -0.1
SHMT2-204ENST00000553324 CLMPQ9H6B4 373 aa14.42□□□□□ -0.1
SHMT2-204ENST00000553324 NOL11Q9H8H0 719 aaKnown RBP14.42□□□□□ -0.1
SHMT2-204ENST00000553324 ZBTB20Q9HC78 741 aaPredicted RBP14.42□□□□□ -0.1
SHMT2-204ENST00000553324 LYRM4Q9HD34 91 aa14.42□□□□□ -0.1
SHMT2-204ENST00000553324 MMP25Q9NPA2 562 aa14.42□□□□□ -0.1
SHMT2-204ENST00000553324 PRDM7Q9NQW5 492 aa14.42□□□□□ -0.1
SHMT2-204ENST00000553324 PTGFRNQ9P2B2 879 aa14.42□□□□□ -0.1
SHMT2-204ENST00000553324 IGHV3-20A0A0C4DH32 117 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 FOXE1O00358 373 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-204ENST00000553324 CDK2AP1O14519 115 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 VPS4BO75351 444 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 SIX3O95343 332 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-204ENST00000553324 TGFB1P01137 390 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 SOX11P35716 441 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 CD97P48960 835 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 RASA2Q15283 850 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 INPP5JQ15735 1006 aaPredicted RBP14.41□□□□□ -0.1
SHMT2-204ENST00000553324 COLEC12Q5KU26 742 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 ABHD17BQ5VST6 288 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 KHDRBS2Q5VWX1 349 aaKnown RBP14.41□□□□□ -0.1
SHMT2-204ENST00000553324 PAPD4Q6PIY7 484 aaKnown RBP14.41□□□□□ -0.1
SHMT2-204ENST00000553324 LINC00696Q6ZRV3 163 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 TDRPQ86YL5 185 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 MIB2Q96AX9 1013 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 RGMAQ96B86 450 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 ZNF354BQ96LW1 612 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 MS4A12Q9NXJ0 267 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 STMN3Q9NZ72 180 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 DAPP1Q9UN19 280 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 VPS4AQ9UN37 437 aa14.41□□□□□ -0.1
SHMT2-204ENST00000553324 HELZ2Q9BYK8 2649 aaKnown RBP14.41□□□□□ -0.1
SHMT2-204ENST00000553324 A0A0G2JN53 185 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 TCRBV16S1A1N1A0A5B0 115 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 A8MUI8 341 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 C4orf51C9J302 202 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 FAM227AF5H4B4 570 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 SLU7O95391 586 aaKnown RBP14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ITGAMP11215 1152 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 HIST1H1TP22492 207 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ARL1P40616 181 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-204ENST00000553324 RAP1GDS1P52306 607 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 LIM2P55344 173 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 TAS2R50P59544 299 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ARG2P78540 354 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 BTG2P78543 158 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 CUL3Q13618 768 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 IGFBP7Q16270 282 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 CPSF6Q16630 551 aaKnown RBP eCLIP14.4□□□□□ -0.1
SHMT2-204ENST00000553324 B3GNTL1Q67FW5 361 aaPredicted RBP14.4□□□□□ -0.1
SHMT2-204ENST00000553324 OR4C11Q6IEV9 310 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ADNP2Q6IQ32 1131 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 H3F3CQ6NXT2 135 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 MILR1Q7Z6M3 343 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 SLC22A9Q8IVM8 553 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 GSPT2Q8IYD1 628 aaKnown RBP14.4□□□□□ -0.1
SHMT2-204ENST00000553324 SHISA5Q8N114 240 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 TMEM151AQ8N4L1 468 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 SIRT6Q8N6T7 355 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ACOT4Q8N9L9 421 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 Q8NA96 180 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 TSLPQ969D9 159 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 C1QTNF3Q9BXJ4 246 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 RNF32Q9H0A6 362 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ANKZF1Q9H8Y5 726 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 KCNK13Q9HB14 408 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 PRTFDC1Q9NRG1 225 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 ABI3Q9P2A4 366 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 TBK1Q9UHD2 729 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 PCTPQ9UKL6 214 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 PPT2Q9UMR5 302 aa14.4□□□□□ -0.1
SHMT2-204ENST00000553324 SPENQ96T58 3664 aaKnown RBP14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SCN3AQ9NY46 2000 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 IGKV3D-11A0A0A0MRZ8 115 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 LRRC14BA6NHZ5 514 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 CYR61O00622 381 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 OR7A17O14581 309 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 CTNSO60931 367 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SCELO95171 688 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 OTCP00480 354 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 PYGBP11216 843 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 MAOAP21397 527 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 ATP5A1P25705 553 aaKnown RBP14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SSR2P43308 183 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 CCT5P48643 541 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SLC26A5P58743 744 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SLC13A2Q13183 592 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 BIKQ13323 160 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 DDX39BQ13838 428 aaKnown RBP14.39□□□□□ -0.11
SHMT2-204ENST00000553324 ZNF169Q14929 603 aaPredicted RBP14.39□□□□□ -0.11
SHMT2-204ENST00000553324 TERF2Q15554 542 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 MEP1AQ16819 746 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 RPUSD3Q6P087 351 aaKnown RBP14.39□□□□□ -0.11
SHMT2-204ENST00000553324 UBE3DQ7Z6J8 389 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 CYP4X1Q8N118 509 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SLC5A8Q8N695 610 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 GALNT11Q8NCW6 608 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 MYRIPQ8NFW9 859 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 SUN3Q8TAQ9 357 aa14.39□□□□□ -0.11
SHMT2-204ENST00000553324 CCDC126Q96EE4 140 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms