RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 ZNF367Q7RTV3 350 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 DCAF4L2Q8NA75 395 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C11orf65Q8NCR3 313 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 FLCNQ8NFG4 579 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 OR4A15Q8NGL6 344 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 OR5AK3PQ8NH89 298 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 WDR36Q8NI36 951 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C9orf43Q8TAL5 461 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CHTF18Q8WVB6 975 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SOCS4Q8WXH5 440 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CIDECQ96AQ7 238 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 HIST1H2AHQ96KK5 128 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 MAGEB10Q96LZ2 347 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SLC6A18Q96N87 628 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SNX18Q96RF0 628 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 IL4I1Q96RQ9 567 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 HIST1H2AJQ99878 128 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TCF25Q9BQ70 676 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TTYH2Q9BSA4 534 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 H2AFJQ9BTM1 129 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 VN1R3Q9BXE9 311 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ASPNQ9BXN1 380 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 MMP28Q9H239 520 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SMURF1Q9HCE7 757 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ATP13A2Q9NQ11 1180 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TIGARQ9NQ88 270 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 IMPAD1Q9NX62 359 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TAS2R9Q9NYW1 312 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SH3BP4Q9P0V3 963 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TBC1D14Q9P2M4 693 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 BTNL2Q9UIR0 455 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 STOML2Q9UJZ1 356 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CORO2BQ9UQ03 480 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 RUVBL1Q9Y265 456 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CFL2Q9Y281 166 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TRAPPC4Q9Y296 219 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 WBP11Q9Y2W2 641 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 LSM2Q9Y333 95 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 A0A0B4J293 547 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ZAR1LA6NP61 321 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 A8MVJ9 347 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ARHGEF33A8MVX0 844 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CENPBD1B2RD01 187 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CCRL2O00421 344 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TFECO14948 347 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 RGS5O15539 181 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 LRRTM2O43300 516 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SCO2O43819 266 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SEMA7AO75326 666 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ENTPD6O75354 484 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 KLHL18O94889 574 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C6orf47O95873 294 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 FHP07954 510 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 HBQ1P09105 142 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SRCP12931 536 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CD70P32970 193 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CRYBB2P43320 205 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 XCR1P46094 333 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 NKX3-2P78367 333 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 NAE1Q13564 534 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SCARB2Q14108 478 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 STARD3Q14849 445 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 GPNMBQ14956 572 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CLPPQ16740 277 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 IFI44LQ53G44 452 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CST9Q5W186 159 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 PLAG1Q6DJT9 500 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ZNF770Q6IQ21 691 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 NLRP8Q86W28 1048 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 THOC6Q86W42 341 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 RASGRP3Q8IV61 690 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 LAS2Q8IYD9 372 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 AQP11Q8NBQ7 271 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 VPS37AQ8NEZ2 397 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SETD6Q8TBK2 473 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C2orf15Q8WU43 125 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 OVCA2Q8WZ82 227 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SCAMP4Q969E2 229 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 COQ8BQ96D53 544 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TMCO6Q96DC7 493 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 RNF31Q96EP0 1072 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 RNF170Q96K19 258 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 FYTTD1Q96QD9 318 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 LYSMD1Q96S90 227 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 SRRQ9GZT4 340 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 EXOSC4Q9NPD3 245 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CCDC177Q9NQR7 707 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 ASAH2Q9NR71 780 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 C1GALT1Q9NS00 363 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 THSD1Q9NS62 852 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 DDX28Q9NUL7 540 aaKnown RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TMEM161AQ9NX61 479 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TRPM5Q9NZQ8 1165 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 CRNNQ9UBG3 495 aaPredicted RBP5.19□□□□□ -1.58
LIMA1-212ENST00000552491 GRIP1Q9Y3R0 1128 aa5.19□□□□□ -1.58
LIMA1-212ENST00000552491 TRBV4-1A0A0J9YWV2 114 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.18□□□□□ -1.58
LIMA1-212ENST00000552491 A0A1W2PQ09 198 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 MEIOCA2RUB1 952 aa5.18□□□□□ -1.58
LIMA1-212ENST00000552491 SH3D21A4FU49 640 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms