RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 GNB3P16520 340 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 CHRNB4P30926 498 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 CASP3P42574 277 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 CETN1Q12798 172 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 TRIM29Q14134 588 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 SLC39A12Q504Y0 691 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 TMEM270Q6UE05 265 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 CROCCP3Q8IVE0 287 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 LSMEM2Q8N112 164 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 ZNF501Q96CX3 271 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-205ENST00000550592 PRMT1Q99873 361 aaKnown RBP4.31□□□□□ -1.72
LIMA1-205ENST00000550592 ALKBH7Q9BT30 221 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-205ENST00000550592 PI4K2AQ9BTU6 479 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 EGLN3Q9H6Z9 239 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 GPR173Q9NS66 373 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 PDRG1Q9NUG6 133 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 CWC25Q9NXE8 425 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-205ENST00000550592 TMOD3Q9NYL9 352 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 SLC12A6Q9UHW9 1150 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 ELF5Q9UKW6 265 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-205ENST00000550592 PPP2R2CQ9Y2T4 447 aa4.31□□□□□ -1.72
LIMA1-205ENST00000550592 RBBP6Q7Z6E9 1792 aaKnown RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 PFASO15067 1338 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 A0A1W2PRV1 198 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 MTMR11A4FU01 709 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 ANTXRLA6NF34 631 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 SLCO1B7G3V0H7 640 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 TEX28O15482 410 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 TTI1O43156 1089 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 SCO2O43819 266 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 KINO60870 393 aaKnown RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 ATP9AO75110 1047 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 CRCPO75575 148 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 GLCEO94923 617 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 SEC24AO95486 1093 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 AMBPP02760 352 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 RAF1P04049 648 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 SP1P08047 785 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 SLC2A2P11168 524 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 CEBPBP17676 345 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 VCLP18206 1134 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 HNF4AP41235 474 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 ADARP55265 1226 aaKnown RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 CLDN17P56750 224 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 GNB1P62873 340 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 AKAP17AQ02040 695 aaKnown RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 SRSF9Q13242 221 aaKnown RBP eCLIP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 ZNF74Q16587 644 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 C9orf50Q5SZB4 431 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 ARHGAP17Q68EM7 881 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 LEKR1Q6ZMV7 388 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 CCDC83Q8IWF9 413 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 AQP12AQ8IXF9 295 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 KLHDC8AQ8IYD2 350 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 KIAA0895Q8NCT3 520 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 OR5AP2Q8NGF4 316 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 OR10G8Q8NGN5 311 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 PDLIM5Q96HC4 596 aaKnown RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 CDKN2AIPNLQ96HQ2 116 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 PRAC1Q96KF2 57 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 RASL10BQ96S79 203 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 NKX3-1Q99801 234 aaPredicted RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 MRPL17Q9NRX2 175 aaKnown RBP4.3□□□□□ -1.72
LIMA1-205ENST00000550592 MAN2C1Q9NTJ4 1040 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 FBXL4Q9UKA2 621 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 PCDHGA1Q9Y5H4 931 aa4.3□□□□□ -1.72
LIMA1-205ENST00000550592 UNC80Q8N2C7 3258 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 A0A087WUV0 522 aaPredicted RBP4.29□□□□□ -1.72
LIMA1-205ENST00000550592 A0A087WW49 117 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 H3BMM5 538 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 ACSL4O60488 711 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 HOXB6P17509 224 aaKnown RBP4.29□□□□□ -1.72
LIMA1-205ENST00000550592 ELAVL4P26378 380 aaKnown RBP4.29□□□□□ -1.72
LIMA1-205ENST00000550592 OR3A3P47888 321 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 OR1D5P58170 312 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 KIAA1024LP59773 190 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 KRTAP1-1Q07627 177 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SGCGQ13326 291 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 PTPN14Q15678 1187 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 C2orf76Q3KRA6 126 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 KRTAP24-1Q3LI83 254 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 LRIT3Q3SXY7 679 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 KLHL22Q53GT1 634 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 LRRC38Q5VT99 294 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 PM20D1Q6GTS8 502 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 RAPH1Q70E73 1250 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SLC24A5Q71RS6 500 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 FCRLAQ7L513 359 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 DCLK2Q8N568 766 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 TMEM178AQ8NBL3 297 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SPC24Q8NBT2 197 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 OR4C15Q8NGM1 316 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 FAM76AQ8TAV0 307 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 SAP25Q8TEE9 199 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 GATAD1Q8WUU5 269 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 DNASE2BQ8WZ79 361 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 KRT35Q92764 455 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 LGALS12Q96DT0 336 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 CABS1Q96KC9 395 aa4.29□□□□□ -1.72
LIMA1-205ENST00000550592 IDI2Q9BXS1 227 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms