RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CRNNQ9UBG3 495 aaPredicted RBP14.4□□□□□ -0.1
CUX1-214ENST00000550008 IL12AP29459 219 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 POLR2IP36954 125 aaKnown RBP14.4□□□□□ -0.1
CUX1-214ENST00000550008 HSD17B2P37059 387 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 STT3AP46977 705 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 CLDN2P57739 230 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 GSTM4Q03013 218 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 ZNF630Q2M218 657 aaPredicted RBP14.4□□□□□ -0.1
CUX1-214ENST00000550008 ZNF773Q6PK81 442 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 GTF2H4Q92759 462 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 FAM129BQ96TA1 746 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 NKX2-4Q9H2Z4 354 aa14.4□□□□□ -0.1
CUX1-214ENST00000550008 A6NHS1 94 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 HCN1O60741 890 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 RNGTTO60942 597 aaKnown RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 EN2P19622 333 aaPredicted RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 MATN1P21941 496 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 SLAMF1Q13291 335 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 COLEC12Q5KU26 742 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 DNAJA3Q96EY1 480 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 RAB11FIP5Q9BXF6 653 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 SFXN1Q9H9B4 322 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 FAM118AQ9NWS6 357 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 LOC105378220A0A1B0GUY1 285 aaPredicted RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 FAM86C2PA6NEL3 165 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 A8MU76 341 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 ABCB7O75027 752 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 ALOX5P09917 674 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 ZSWIM7Q19AV6 140 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 FAM131AQ6UXB0 335 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 POLMQ9NP87 494 aaPredicted RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 SPIN1Q9Y657 262 aaPredicted RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 H3BQ06 376 aaPredicted RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 M0R129 80 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 CLDN4O14493 209 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 OR5F1O95221 314 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 ITGA1P56199 1179 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 EXOC3L2Q2M3D2 409 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 CRTC2Q53ET0 693 aaPredicted RBP14.39□□□□□ -0.11
CUX1-214ENST00000550008 LAPTM4BQ86VI4 370 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 POMGNT2Q8NAT1 580 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 OR10H4Q8NGA5 316 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 TRIB3Q96RU7 358 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 HRASLS2Q9NWW9 162 aa14.39□□□□□ -0.11
CUX1-214ENST00000550008 TMEM202A6NGA9 273 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 TLR4O00206 839 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 SCAMP2O15127 329 aaKnown RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 NUDT7P0C024 238 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 DCTP40126 519 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 COX10Q12887 443 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 COQ5Q5HYK3 327 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 SLC35F1Q5T1Q4 408 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 C6orf120Q7Z4R8 191 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 CARM1Q86X55 608 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 TTLQ8NG68 377 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 S100ZQ8WXG8 99 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 PKMYT1Q99640 499 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 DCSTAMPQ9H295 470 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 RHPN2P1A8MT19 583 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 NUAK1O60285 661 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 PEX11BO96011 259 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 C8BP07358 591 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 SRPRAP08240 638 aaKnown RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 AGXTP21549 392 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 GRIA2P42262 883 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 CD47Q08722 323 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 TSTD1Q8NFU3 115 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 HPS1Q92902 700 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 DIRAS2Q96HU8 199 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 IFT27Q9BW83 186 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 PDFQ9HBH1 243 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 NEUROD4Q9HD90 331 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 ADAM30Q9UKF2 790 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 SNX7Q9UNH6 387 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 CYP8B1Q9UNU6 501 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 HS3ST2Q9Y278 367 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 TCRBV3S1A0A5B6 114 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 SLC35F4A4IF30 521 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 PLOD2O00469 737 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 B3GALT4O96024 378 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 C1QAP02745 245 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 MT-ND2P03891 347 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 ZDHHC11BP0C7U3 371 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 RPS26P11Q5JNZ5 115 aaPredicted RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 KLHL17Q6TDP4 642 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 UGT2A3Q6UWM9 527 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 RTL4Q6ZR62 310 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 LIMS2Q7Z4I7 341 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 ZSWIM3Q96MP5 696 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 DOHHQ9BU89 302 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 ITGB1BP2Q9UKP3 347 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 POFUT2Q9Y2G5 429 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 MICAL3Q7RTP6 2002 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 INMTO95050 263 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 CR2P20023 1033 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 GUCA1AP43080 201 aaPredicted RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 RPS21P63220 83 aaKnown RBP14.38□□□□□ -0.11
CUX1-214ENST00000550008 CAMK1Q14012 370 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 OR52E8Q6IFG1 317 aa14.38□□□□□ -0.11
CUX1-214ENST00000550008 HSDL2Q6YN16 418 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms