RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 TBC1D1Q86TI0 1168 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 ISCA2Q86U28 154 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 HORMAD2Q8N7B1 307 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 FAM47BQ8NA70 645 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 TMEM178AQ8NBL3 297 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 TMEM52Q8NDY8 209 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 NFAM1Q8NET5 270 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 STAG3L4Q8TBR4 150 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 MRRFQ96E11 262 aaKnown RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 SCMH1Q96GD3 660 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 QRFPRQ96P65 431 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 EFCAB11Q9BUY7 163 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 NPLQ9BXD5 320 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 CD244Q9BZW8 370 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 COPS7BQ9H9Q2 264 aaPredicted RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 PNO1Q9NRX1 252 aaKnown RBP15.28■□□□□ 0.04
VPS29-207ENST00000549970 NUDT4Q9NZJ9 180 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 CACNA1DQ01668 2161 aa15.28■□□□□ 0.04
VPS29-207ENST00000549970 NOTCH2Q04721 2471 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 UBXN8O00124 270 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 NEURL1O76050 574 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 WISP2O76076 250 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 LTA4HP09960 611 aaKnown RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 EPORP19235 508 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 CRABP2P29373 138 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 PPP2R1BP30154 601 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 HPDP32754 393 aaPredicted RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 MSH2P43246 934 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 HNRNPFP52597 415 aaKnown RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 MLF1P58340 268 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 CKAP4Q07065 602 aaKnown RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 SLC13A2Q13183 592 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 NAB1Q13506 487 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 LAPTM5Q13571 262 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 HIST2H2ACQ16777 129 aaPredicted RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 ADPRMQ3LIE5 342 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 PAGE2BQ5JRK9 111 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 HIST2H2AA3Q6FI13 130 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 SLC25A25Q6KCM7 469 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 ABHD17CQ6PCB6 329 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 LRRC70Q7Z2Q7 622 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 SCUBE1Q8IWY4 988 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 THAP3Q8WTV1 239 aaPredicted RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 WDR34Q96EX3 536 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 F2RL3Q96RI0 385 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 SERINC2Q96SA4 455 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 ATOH8Q96SQ7 321 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 CSF3RQ99062 836 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 DEFB126Q9BYW3 111 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 TSPAN10Q9H1Z9 355 aaPredicted RBP15.27■□□□□ 0.04
VPS29-207ENST00000549970 NMRAL1Q9HBL8 299 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 IGSF5Q9NSI5 407 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 SH3BGRL2Q9UJC5 107 aa15.27■□□□□ 0.04
VPS29-207ENST00000549970 TRBV11-1A0A0K0K1C0 115 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 TGFBR3LH3BV60 316 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 CLDN4O14493 209 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 KERAO60938 352 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 SLC25A12O75746 678 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 SP1P08047 785 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 CYB561P49447 251 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 MTTPP55157 894 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 LIM2P55344 173 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 HSD17B7P56937 341 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 ALDH6A1Q02252 535 aaKnown RBP15.26■□□□□ 0.03
VPS29-207ENST00000549970 GUCY2DQ02846 1103 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 RBPJQ06330 500 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 TGM3Q08188 693 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 BMPR2Q13873 1038 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 MAPKAPK3Q16644 382 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.26■□□□□ 0.03
VPS29-207ENST00000549970 CLNKQ7Z7G1 428 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 FAM98AQ8NCA5 519 aaKnown RBP15.26■□□□□ 0.03
VPS29-207ENST00000549970 APCDD1LQ8NCL9 501 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 B3GNT7Q8NFL0 401 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 ADAMTS18Q8TE60 1221 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 KCTD4Q8WVF5 259 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 RELTQ969Z4 430 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 NXNL1Q96CM4 212 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 FRMD6Q96NE9 622 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 LRRC1Q9BTT6 524 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 OPTCQ9UBM4 332 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 FBXW2Q9UKT8 454 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 DAPP1Q9UN19 280 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 MRPS33Q9Y291 106 aaKnown RBP15.26■□□□□ 0.03
VPS29-207ENST00000549970 CLDN16Q9Y5I7 305 aa15.26■□□□□ 0.03
VPS29-207ENST00000549970 ASPDHA6ND91 283 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 FCHO1O14526 889 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 SH3BGRLO75368 114 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 PCNAP12004 261 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 CLCN2P51788 898 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 IRF9Q00978 393 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 TBCCQ15814 346 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 UAP1Q16222 522 aaPredicted RBP15.25■□□□□ 0.03
VPS29-207ENST00000549970 MROH9Q5TGP6 573 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 ZNF595Q8IYB9 648 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 C16orf45Q96MC5 204 aaPredicted RBP15.25■□□□□ 0.03
VPS29-207ENST00000549970 KCNC2Q96PR1 638 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 PRDM7Q9NQW5 492 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 ZDHHC18Q9NUE0 388 aa15.25■□□□□ 0.03
VPS29-207ENST00000549970 ACOT9Q9Y305 439 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms