RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 KLHDC8AQ8IYD2 350 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 NKAPQ8N5F7 415 aaKnown RBP11.98□□□□□ -0.49
PTCH1-218ENST00000548945 LILRB4Q8NHJ6 448 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 LRRC39Q96DD0 335 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 FAR2Q96K12 515 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 CCDC77Q9BR77 488 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 PITHD1Q9GZP4 211 aaPredicted RBP11.98□□□□□ -0.49
PTCH1-218ENST00000548945 AICDAQ9GZX7 198 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 RHBGQ9H310 441 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 KLHL31Q9H511 634 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 PLAC1Q9HBJ0 212 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 PPANQ9NQ55 473 aaKnown RBP11.98□□□□□ -0.49
PTCH1-218ENST00000548945 ASIC3Q9UHC3 531 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 SLC22A14Q9Y267 594 aa11.98□□□□□ -0.49
PTCH1-218ENST00000548945 MRPS33Q9Y291 106 aaKnown RBP11.98□□□□□ -0.49
PTCH1-218ENST00000548945 ABCA4P78363 2273 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 CTAGE15A4D2H0 777 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 A8MUA0 341 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 C4orf51C9J302 202 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 BANF1O75531 89 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 ZFAND5O76080 213 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 TFF3Q07654 80 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 ILF2Q12905 390 aaKnown RBP11.97□□□□□ -0.49
PTCH1-218ENST00000548945 STEAP4Q687X5 459 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 RGS9BPQ6ZS82 235 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 MDGA2Q7Z553 956 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 CTAGE6Q86UF2 777 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 IGDCC3Q8IVU1 814 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 ZNF595Q8IYB9 648 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 PDIK1LQ8N165 341 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 MARVELD2Q8N4S9 558 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 RND1Q92730 232 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 OSBPL9Q96SU4 736 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 NT5DC2Q9H857 520 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 SLC24A3Q9HC58 644 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 ADAP2Q9NPF8 381 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 SLC17A6Q9P2U8 582 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 ZNF223Q9UK11 482 aaPredicted RBP11.97□□□□□ -0.49
PTCH1-218ENST00000548945 FBXW2Q9UKT8 454 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 IKZF3Q9UKT9 509 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 OARD1Q9Y530 152 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 CLDN16Q9Y5I7 305 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 HRH3Q9Y5N1 445 aa11.97□□□□□ -0.49
PTCH1-218ENST00000548945 LRIT2A6NDA9 550 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 CDC40O60508 579 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTCH1-218ENST00000548945 H2AFYO75367 372 aaKnown RBP11.96□□□□□ -0.49
PTCH1-218ENST00000548945 C1GALT1C1LP0DN25 315 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 IVDP26440 423 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 RFC3P40938 356 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ELK3P41970 407 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 PGGT1BP53609 377 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 RAB38P57729 211 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ETF1P62495 437 aaKnown RBP11.96□□□□□ -0.49
PTCH1-218ENST00000548945 BTN3A2P78410 334 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 RUNX2Q13950 521 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 RCN2Q14257 317 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 MORF4L2Q15014 288 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ELAVL1Q15717 326 aaKnown RBP11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ADPRMQ3LIE5 342 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 TMIGD1Q6UXZ0 262 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 SLCO4C1Q6ZQN7 724 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ACAD11Q709F0 780 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ADAMTSL2Q86TH1 951 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTCH1-218ENST00000548945 KRT78Q8N1N4 520 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 TMEM132CQ8N3T6 1108 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 PSD4Q8NDX1 1056 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 NCLNQ969V3 563 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 MS4A6EQ96DS6 147 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 CAPS2Q9BXY5 557 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 EHD1Q9H4M9 534 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ZDHHC11Q9H8X9 412 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 PRTFDC1Q9NRG1 225 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 PNO1Q9NRX1 252 aaKnown RBP11.96□□□□□ -0.49
PTCH1-218ENST00000548945 IGSF5Q9NSI5 407 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 ERVK-11Q9UQG0 969 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 RNF6Q9Y252 685 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 TEX264Q9Y6I9 313 aa11.96□□□□□ -0.49
PTCH1-218ENST00000548945 HRNRQ86YZ3 2850 aaPredicted RBP11.96□□□□□ -0.5
PTCH1-218ENST00000548945 ACANP16112 2415 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 OR14I1A6ND48 311 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 TMEM200CA6NKL6 621 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 A8MVJ9 347 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 ACOT7O00154 380 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 CDC7O00311 574 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 ERI3O43414 337 aaKnown RBP11.95□□□□□ -0.5
PTCH1-218ENST00000548945 B3GALT2O43825 422 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 CLEC3AO75596 197 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 TOXO94900 526 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 CD1EP15812 388 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 MSX1P28360 303 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 HNRNPH1P31943 449 aaKnown RBP11.95□□□□□ -0.5
PTCH1-218ENST00000548945 SLC6A12P48065 614 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 GPR85P60893 370 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 GNG11P61952 73 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 SLC13A2Q13183 592 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 EMC4Q5J8M3 183 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 TRMT10BQ6PF06 316 aaKnown RBP11.95□□□□□ -0.5
PTCH1-218ENST00000548945 CEP128Q6ZU80 1094 aa11.95□□□□□ -0.5
PTCH1-218ENST00000548945 ZC3HC1Q86WB0 502 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms