RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 PPP1R36Q96LQ0 422 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 HEXIM2Q96MH2 286 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 SERPINB11Q96P15 392 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SORCS2Q96PQ0 1159 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MCCC1Q96RQ3 725 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 DPYSL5Q9BPU6 564 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 APOL2Q9BQE5 337 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SLC6A17Q9H1V8 727 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TFB2MQ9H5Q4 396 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 FARSBQ9NSD9 589 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 PPP1R14DQ9NXH3 145 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GMPR2Q9P2T1 348 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 MBD2Q9UBB5 411 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TJP2Q9UDY2 1190 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TBC1D29Q9UFV1 150 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ENOPH1Q9UHY7 261 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PKP3Q9Y446 797 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ANKRD36A6QL64 1941 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CKAP5Q14008 2032 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CLCA1A8K7I4 914 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 C10orf142B7Z368 130 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PTGES3LE9PB15 166 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SGK494L7N484 410 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 UBFD1O14562 309 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 KPNA5O15131 536 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MFSD11O43934 449 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 HS6ST1O60243 411 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 KLK8O60259 260 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MPZL2O60487 215 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PTP4A3O75365 173 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PIAS2O75928 621 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR4F21O95013 312 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SNAPINO95295 136 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 FADS2O95864 444 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 DBTP11182 482 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 YWHAQP27348 245 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR1D2P34982 312 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CRADDP78560 199 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 LCP2Q13094 533 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 HTR4Q13639 388 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GNA13Q14344 377 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RAP1GAP2Q684P5 730 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 OR4F3Q6IEY1 312 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TYW3Q6IPR3 259 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 ERICH5Q6P6B1 374 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 MACC1Q6ZN28 852 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 Q6ZNB5 142 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RRM2BQ7LG56 351 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RNF135Q8IUD6 432 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 DNAJC22Q8N4W6 341 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ZNF366Q8N895 744 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CREB3L1Q96BA8 519 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 TUBGCP3Q96CW5 907 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 B3GALT6Q96L58 329 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ZNF583Q96ND8 569 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ZNF599Q96NL3 588 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SEPHS2Q99611 448 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SPON2Q9BUD6 331 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 PHF7Q9BWX1 381 aaPredicted RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 SHARPINQ9H0F6 387 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 CYP4F12Q9HCS2 524 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 ZC4H2Q9NQZ6 224 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 RBFOX1Q9NWB1 397 aaKnown RBP5.06□□□□□ -1.6
USP28-213ENST00000544967 SH3BP4Q9P0V3 963 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 GMEB2Q9UKD1 530 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SESN1Q9Y6P5 492 aa5.06□□□□□ -1.6
USP28-213ENST00000544967 SHISA7A6NL88 538 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SLC38A8A6NNN8 435 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 MYL12BO14950 172 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 XPNPEP2O43895 674 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ORC5O43913 435 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 WBP4O75554 376 aaKnown RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 LDOC1O95751 146 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 MLYCDO95822 493 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 IL1AP01583 271 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 C8AP07357 584 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 UROSP10746 265 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 SLC2A4P14672 509 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 HNRNPLP14866 589 aaKnown RBP eCLIP5.05□□□□□ -1.6
USP28-213ENST00000544967 MYL12AP19105 171 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 MAOBP27338 520 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 RORCP51449 518 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 TPMTP51580 245 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 TAS2R39P59534 338 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 NRG1Q02297 640 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 CAPRIN1Q14444 709 aaKnown RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 ZNF273Q14593 569 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ZNF79Q15937 498 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CARTPTQ16568 116 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 MAPKAPK3Q16644 382 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 MICAQ29983 383 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 TTLL9Q3SXZ7 439 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 RABL3Q5HYI8 236 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CACHD1Q5VU97 1274 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 FBXO15Q8NCQ5 510 aaPredicted RBP5.05□□□□□ -1.6
USP28-213ENST00000544967 OR2T12Q8NG77 320 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CEP76Q8TAP6 659 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 CNIH3Q8TBE1 160 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 ZNF675Q8TD23 568 aa5.05□□□□□ -1.6
USP28-213ENST00000544967 FAM149B1Q96BN6 582 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms